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Compile Time Estimator integrated into genlop

You are here: Portage

Details of dev-haskell/bio:

available versions:

releases	alpha	amd64	arm	hppa	ia64	mips	ppc	ppc64	ppc macos	s390	sh	sparc	x86	USE-Flags	dependencies	ebuild warnings

Legend:
+ stable
~ testing
- not available
some ebuild warning depend on specific use-flags or architectures, all ebuild-warnings are shown.

Known bugs:

bug ID	component	assigned to	status	description	last change
366975	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/gbrowse-2.33 fails to install, due to ACCESS VIOLATION	2012-01-04 08:07:11
368473	Applications	sci-biology	UNCONFIRMED	sci-biology/hmmer-3.0 fails to build with "mpi.c:27:23: error: impl_dummy.: No such file or director	2011-06-21 09:31:43
377079	Applications	mmokrejs	UNCONFIRMED	sci-biology/GBrowse-2.39 fails to compile	2011-08-02 20:22:32
380105	Core system	polynomial-c	UNCONFIRMED	sys-libs/libsmbios - insecure RUNPATHs:/usr/sbin/smbios-sys-info-lite	2011-08-25 12:50:02
382321	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3 runtime functionality missing	2011-09-09 23:18:48
383659	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/emboss-6.4 version bump	2012-02-24 18:29:22
383789	Applications	sci-biology	UNCONFIRMED	sci-biology/ncbi-tools++-2010.06.15-r1: libmzXML.so: undefined reference to `ncbi::CMemberInfo::SetN	2013-02-17 08:11:13
389765	Applications	sci-biology	UNCONFIRMED	sci-biology/unafold - add graphic capabilities of mfold_utils	2013-02-17 08:24:03
393311	Ebuilds	sci-biology	UNCONFIRMED	sci-biology/emboss-6.0.1 does not respect CFLAGS="-O?"	2012-02-02 17:39:58
395891	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-memenew-4.0.0-r1 fails to fetch embassy-memenew-4.0.0-r1.tar.g	2012-02-20 14:34:30
396091	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge because of relocation problem	2012-01-01 08:50:47
396657	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge due to missing jkweb.a	2012-02-11 16:02:44
401943	Applications	sci-biology	UNCONFIRMED	sci-biology/transfac-3.2 - tfextract segmentation fault in 0x00007f5df6cc4487 in ajStrDel (Pstr=0x7	2012-02-04 17:26:44
402835	Applications	sci-biology	UNCONFIRMED	sci-biology/ucsc-genome-browser: add -fPIC to CFLAGS and USE=+static-libs	2013-02-17 08:24:19
402849	Applications	sci-biology	UNCONFIRMED	sci-biology/GBrowse: add USE="chado" and its dependencies	2013-02-17 08:26:23
404249	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 multiple slot conflicts.	2012-02-20 14:33:49
405035	Applications	sci-biology	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 fails to emerge because of dependency on embassy-domaina	2012-02-20 14:33:45
406279	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3.1_p4 - add dependency on sci-libs/plplot?	2012-02-29 16:17:32
418625	Applications	sci-biology	UNCONFIRMED	sci-biology/gatk-1.5: error: name clash: sum(Collection) and sum(Collection) have t	2013-02-17 08:28:02
422643	Applications	graphics	UNCONFIRMED	media-gfx/graphviz-2.28.0 sci-biology/phrap-1.080812 - file collision in /usr/bin/cluster	2012-06-21 14:28:59
435270	Library	proaudio	UNCONFIRMED	media-libs/aubio-0.3.2-r1 - SyntaxError: ('invalid syntax', ('/usr/lib64/python2.7/site-packages/aub	2012-09-17 11:44:31
442326	Applications	qemu	UNCONFIRMED	sys-firmware/sgabios-0.1_pre8 - Compile phase failure - ld: i386:x86-64 architecture of input file `	2012-11-08 10:43:27
448124	Development	toolchain	UNCONFIRMED	sys-devel-gcc-4.5.3: internal compiler error on sci-biology/ncbi-tools++-9.0.0/work/ncbi_cxx--9_0_0/	2012-12-26 17:28:43
450322	Applications	sci-biology	UNCONFIRMED	sci-biology/mira-3.4.0.2 - libtool: Version mismatch error. This is libtool 2.4, but the definition	2013-02-17 09:09:47
453156	Applications	cardoe	UNCONFIRMED	sys-firmware/seabios-1.7.2 version bump	2013-01-29 12:28:45
456292	Other	ten	UNCONFIRMED	LiveDVD 20121221: Kernel cannot detect BIOS RAID array	2013-02-10 06:48:14

back

New Packages

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awscli - 1.44.32

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boto3 - 1.42.42

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ensurepip-pip - 26.0.1

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Shared pip wheel for ensurepip Python module

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firefox-bin - 147.0.3

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freenet - 0.7.5_p1503-r2

Ebuild name:

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freenet - 0.7.5_p1504

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freenet-ext - 29-r2

Ebuild name:

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Description

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godcc - 1.0

Ebuild name:

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Description

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id - 1.6.1

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leptonica - 1.87.0

Ebuild name:

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Description

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2026-02-05

livecd-tools - 2.12

Ebuild name:

app-misc/livecd-tools-2.12

Description

Gentoo LiveCD tools for autoconfiguration of hardware

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2026-02-05

man-pages-zh_CN - 1.6.4.2-r1

Ebuild name:

app-i18n/man-pages-zh_CN-1.6.4.2-r1

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A somewhat comprehensive collection of Chinese Linux man pages

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marshmallow - 4.2.2

Ebuild name:

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musl - 1.2.5-r8

Ebuild name:

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Description

Light, fast and, simple C library focused on standards-conformance and safet

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2026-02-05

nginx - 1.28.2

Ebuild name:

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Description

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nginx - 1.29.5

Ebuild name:

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org-mode - 9.7.39

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pam - 1.7.1-r3

Ebuild name:

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paraview - 6.0.1

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sci-visualization/paraview-6.0.1

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Powerful scientific data visualization application

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pbs-installer - 2026.2.3

Ebuild name:

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2026-02-05

phonenumbers - 9.0.23

Ebuild name:

dev-python/phonenumbers-9.0.23

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2026-02-05

pip - 26.0.1

Ebuild name:

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Description

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2026-02-05

protobuf - 5.29.6

Ebuild name:

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Description

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2026-02-05

pycpio - 1.7.0

Ebuild name:

dev-python/pycpio-1.7.0

Description

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2026-02-05

quiche - 0.24.9

Ebuild name:

net-libs/quiche-0.24.9

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2026-02-05

repo - 2.61

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Ebuild name:

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sphinxcontrib-httpdomain - 2.0.0

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sqlglot - 28.10.0

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tenacity - 9.1.3

Ebuild name:

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uv - 0.9.30

Ebuild name:

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2026-02-05

uv-build - 0.9.30

Ebuild name:

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Description

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2026-02-05

vector - 1.8.0

Ebuild name:

dev-python/vector-1.8.0

Description

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2026-02-05

zenlib - 3.3.0

Ebuild name:

dev-python/zenlib-3.3.0

Description

Useful python decorators and utilities

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2026-02-05

zlib-ng - 2.3.3

Ebuild name:

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Description

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GnuPG-Interface - 1.50.0-r1

Ebuild name:

dev-perl/GnuPG-Interface-1.50.0-r1

Description

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2026-02-04

arch-chroot - 31

Ebuild name:

sys-apps/arch-chroot-31

Description

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2026-02-04

asgiref - 3.11.1

Ebuild name:

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Description

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2026-02-04

autoconf - 2.72.90

Ebuild name:

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Description

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awscli - 1.44.31

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2026-02-04

boto3 - 1.42.41

Ebuild name:

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Description

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2026-02-04

botocore - 1.42.41

Ebuild name:

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Description

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2026-02-04

byacc - 20260126

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Description

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2026-02-04

certbot - 5.3.0

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Description

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2026-02-04

claude-code - 2.1.30

Ebuild name:

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2026-02-04

cmd2 - 3.1.3

Ebuild name:

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2026-02-04

conntrack-tools - 1.4.9

Ebuild name:

net-firewall/conntrack-tools-1.4.9

Description

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2026-02-04

coreutils - 9.10

Ebuild name:

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Description

Standard GNU utilities (chmod, cp, dd, ls, sort, tr, head, wc, who,...)

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2026-02-04

coverage - 7.13.3

Ebuild name:

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2026-02-04

cryptsetup - 2.8.4

Ebuild name:

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Description

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2026-02-04

denonavr - 1.3.1

Ebuild name:

dev-python/denonavr-1.3.1

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2026-02-04

django - 4.2.28

Ebuild name:

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2026-02-04

django - 5.2.11

Ebuild name:

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Description

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2026-02-04

django - 6.0.2

Ebuild name:

dev-python/django-6.0.2

Description

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2026-02-04

dropbox - 241.4.4795

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Description

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2026-02-04

eigen - 3.4.9999

Ebuild name:

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2026-02-04

elasticsearch - 9.3.0

Ebuild name:

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2026-02-04

emboss - 6.6.0-r4

Ebuild name:

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2026-02-04

exfatprogs - 1.3.1

Ebuild name:

sys-fs/exfatprogs-1.3.1

Description

Userspace utilities for the exFAT filesystem

Added to portage

2026-02-04

genfstab - 31

Ebuild name:

sys-fs/genfstab-31

Description

Genfstab - generate output suitable for addition to an fstab file

Added to portage

2026-02-04

gnupg - 2.5.17-r1

Ebuild name:

app-crypt/gnupg-2.5.17-r1

Description

The GNU Privacy Guard, a GPL OpenPGP implementation

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2026-02-04

google-api-python-client - 2.189.0

Ebuild name:

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Description

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2026-02-04

hypothesis - 6.151.5

Ebuild name:

dev-python/hypothesis-6.151.5

Description

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2026-02-04

juliamono - 0.062

Ebuild name:

media-fonts/juliamono-0.062

Description

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Added to portage

2026-02-04

kleopatra - 25.12.1-r2

Ebuild name:

kde-apps/kleopatra-25.12.1-r2

Description

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2026-02-04

kmscon - 9.3.1

Ebuild name:

sys-apps/kmscon-9.3.1

Description

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2026-02-04

libbpf - 1.6.3

Ebuild name:

dev-libs/libbpf-1.6.3

Description

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Added to portage

2026-02-04

libcamera - 0.7.0-r1

Ebuild name:

media-libs/libcamera-0.7.0-r1

Description

Complex camera support library

Added to portage

2026-02-04

libdwarf - 2.3.0

Ebuild name:

dev-libs/libdwarf-2.3.0

Description

Library intended to simplify reading (and writing) applications using DWARF

Added to portage

2026-02-04

libgcrypt - 1.12.0-r2

Ebuild name:

dev-libs/libgcrypt-1.12.0-r2

Description

General purpose crypto library based on the code used in GnuPG

Added to portage

2026-02-04

libnetfilter_conntrack - 1.1.1

Ebuild name:

net-libs/libnetfilter_conntrack-1.1.1

Description

Programming interface (API) to the in-kernel connection track

Added to portage

2026-02-04

limine - 10.6.4

Ebuild name:

sys-boot/limine-10.6.4

Description

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Added to portage

2026-02-04

logwatch - 7.14

Ebuild name:

sys-apps/logwatch-7.14

Description

Analyzes and Reports on system logs

Added to portage

2026-02-04

mawk - 1.3.4_p20260129

Ebuild name:

sys-apps/mawk-1.3.4_p20260129

Description

An (often faster than gawk) awk-interpreter

Added to portage

2026-02-04

mod_h2 - 2.0.38

Ebuild name:

www-apache/mod_h2-2.0.38

Description

HTTP/2 module for Apache

Added to portage

2026-02-04

mold - 2.40.4-r1

Ebuild name:

sys-devel/mold-2.40.4-r1

Description

A Modern Linker

Added to portage

2026-02-04

mozc - 2.32.5994.102-r1

Ebuild name:

app-i18n/mozc-2.32.5994.102-r1

Description

Mozc - Japanese input method editor.

Added to portage

2026-02-04

nprolog - 4.81

Ebuild name:

dev-lang/nprolog-4.81

Description

Interpreter and compiler to be compatible with Arity/Prolog32

Added to portage

2026-02-04

openpgp-keys-craigsmall - 20260203

Ebuild name:

sec-keys/openpgp-keys-craigsmall-20260203

Description

OpenPGP key used by Craig Small

Added to portage

2026-02-04

openpgp-keys-gentoo-developers - 20260112-r1

Ebuild name:

sec-keys/openpgp-keys-gentoo-developers-20260112-r1

Description

Gentoo Authority Keys (GLEP 79)

Added to portage

2026-02-04

openpgp-keys-hclee - 20260204

Ebuild name:

sec-keys/openpgp-keys-hclee-20260204

Description

OpenPGP key used by Hyunchul Lee (hclee)

Added to portage

2026-02-04

openpgp-keys-khali - 20260204

Ebuild name:

sec-keys/openpgp-keys-khali-20260204

Description

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Added to portage

2026-02-04

openpgp-keys-ludovicrousseau - 20260204

Ebuild name:

sec-keys/openpgp-keys-ludovicrousseau-20260204

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Added to portage

2026-02-04

openpgp-keys-thomasdickey - 20260204

Ebuild name:

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Description

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Added to portage

2026-02-04

org-mode - 9999

Ebuild name:

app-emacs/org-mode-9999

Description

An Emacs mode for notes and project planning

Added to portage

2026-02-04

org-modern - 1.10

Ebuild name:

app-emacs/org-modern-1.10

Description

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Added to portage

2026-02-04

org-modern - 1.11

Ebuild name:

app-emacs/org-modern-1.11

Description

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Added to portage

2026-02-04

org-modern - 1.12

Ebuild name:

app-emacs/org-modern-1.12

Description

Modern style for your GNU Emacs Org buffers

Added to portage

2026-02-04

org-modern - 9999

Ebuild name:

app-emacs/org-modern-9999

Description

Modern style for your GNU Emacs Org buffers

Added to portage

2026-02-04

org-roam - 2.2.2-r3

Ebuild name:

app-emacs/org-roam-2.2.2-r3

Description

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Added to portage

2026-02-04

org-roam - 2.3.0

Ebuild name:

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pandoc-bin - 3.9

Ebuild name:

app-text/pandoc-bin-3.9

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2026-02-04

pcsc-lite - 2.4.1

Ebuild name:

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pencil - 0.7.0_p20260127

Ebuild name:

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2026-02-04

procps - 4.0.6

Ebuild name:

sys-process/procps-4.0.6

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2026-02-04

pyglet - 2.1.13

Ebuild name:

dev-python/pyglet-2.1.13

Description

Cross-platform windowing and multimedia library for Python

Added to portage

2026-02-04

python - 0.3.13.12

Ebuild name:

dev-lang/python-0.3.13.12

Description

Freethreading (no-GIL) version of Python programming language

Added to portage

2026-02-04

python - 0.3.14.3

Ebuild name:

dev-lang/python-0.3.14.3

Description

Freethreading (no-GIL) version of Python programming language

Added to portage

2026-02-04

python - 3.13.12

Ebuild name:

dev-lang/python-3.13.12

Description

An interpreted, interactive, object-oriented programming language

Added to portage

2026-02-04

python - 3.14.3

Ebuild name:

dev-lang/python-3.14.3

Description

An interpreted, interactive, object-oriented programming language

Added to portage

2026-02-04

python-tests - 0.3.13.12

Ebuild name:

dev-python/python-tests-0.3.13.12

Description

Test modules from dev-lang/python

Added to portage

2026-02-04

python-tests - 0.3.14.3

Ebuild name:

dev-python/python-tests-0.3.14.3

Description

Test modules from dev-lang/python

Added to portage

2026-02-04

python-tests - 3.13.12

Ebuild name:

dev-python/python-tests-3.13.12

Description

Test modules from dev-lang/python

Added to portage

2026-02-04

python-tests - 3.14.3

Ebuild name:

dev-python/python-tests-3.14.3

Description

Test modules from dev-lang/python

Added to portage

2026-02-04

pyzotero - 1.9.0

Ebuild name:

dev-python/pyzotero-1.9.0

Description

A Python client for the Zotero API

Added to portage

2026-02-04

qca - 2.3.10-r1

Ebuild name:

app-crypt/qca-2.3.10-r1

Description

Qt Cryptographic Architecture (QCA)

Added to portage

2026-02-04

qca - 9999

Ebuild name:

app-crypt/qca-9999

Description

Qt Cryptographic Architecture (QCA)

Added to portage

2026-02-04

quickcrypt - 0.9.2b-r1

Ebuild name:

app-crypt/quickcrypt-0.9.2b-r1

Description

gives you a quick MD5 Password from any string

Added to portage

2026-02-04

quickcrypt - 0.9.2b-r1

Ebuild name:

app-crypt/quickcrypt-0.9.2b-r1

Description

gives you a quick MD5 Password from any string

Added to portage

2026-02-04

reflex - 20260131

Ebuild name:

sys-devel/reflex-20260131

Description

This is a variant of the flex fast lexical scanner

Added to portage

2026-02-04

ruff - 0.15.0

Ebuild name:

dev-util/ruff-0.15.0

Description

An extremely fast Python linter, written in Rust

Added to portage

2026-02-04

sabctools - 9.3.2

Ebuild name:

dev-python/sabctools-9.3.2

Description

Module providing raw yEnc encoding/decoding for SABnzbd

Added to portage

2026-02-04

speechd-el - 2.12

Ebuild name:

app-accessibility/speechd-el-2.12

Description

Emacs speech support

Added to portage

2026-02-04

teamspeak-client - 6.0.0_beta3-r4

Ebuild name:

media-sound/teamspeak-client-6.0.0_beta3-r4

Description

A client software for quality voice communication via t

Added to portage

2026-02-04

tqdm - 4.67.3

Ebuild name:

dev-python/tqdm-4.67.3

Description

Add a progress meter to your loops in a second

Added to portage

2026-02-04

userspace-rcu - 0.15.6

Ebuild name:

dev-libs/userspace-rcu-0.15.6

Description

Userspace RCU (read-copy-update) library

Added to portage

2026-02-04

uv - 0.9.29

Ebuild name:

dev-python/uv-0.9.29

Description

A Python package installer and resolver, written in Rust

Added to portage

2026-02-04

uv-build - 0.9.29

Ebuild name:

dev-python/uv-build-0.9.29

Description

PEP517 uv build backend

Added to portage

2026-02-04

virt-firmware - 25.12

Ebuild name:

app-emulation/virt-firmware-25.12

Description

Tools for ovmf/armvirt firmware volumes

Added to portage

2026-02-04

wordpress - 6.9.1

Ebuild name:

www-apps/wordpress-6.9.1

Description

Wordpress PHP and MySQL based content management system (CMS)

Added to portage

2026-02-04

yaml - 1.2.3

Ebuild name:

app-emacs/yaml-1.2.3

Description

YAML parser in Emacs Lisp

Added to portage

2026-02-04

yt-dlp - 2026.02.04

Ebuild name:

net-misc/yt-dlp-2026.02.04

Description

youtube-dl fork with additional features and fixes

Added to portage

2026-02-04

zope-component - 7.1

Ebuild name:

dev-python/zope-component-7.1

Description

Zope Component Architecture

Added to portage

2026-02-04

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