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Compile Time Estimator integrated into genlop

You are here: Portage

Details of dev-haskell/bio:

available versions:

releases	alpha	amd64	arm	hppa	ia64	mips	ppc	ppc64	ppc macos	s390	sh	sparc	x86	USE-Flags	dependencies	ebuild warnings

Legend:
+ stable
~ testing
- not available
some ebuild warning depend on specific use-flags or architectures, all ebuild-warnings are shown.

Known bugs:

bug ID	component	assigned to	status	description	last change
366975	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/gbrowse-2.33 fails to install, due to ACCESS VIOLATION	2012-01-04 08:07:11
368473	Applications	sci-biology	UNCONFIRMED	sci-biology/hmmer-3.0 fails to build with "mpi.c:27:23: error: impl_dummy.: No such file or director	2011-06-21 09:31:43
377079	Applications	mmokrejs	UNCONFIRMED	sci-biology/GBrowse-2.39 fails to compile	2011-08-02 20:22:32
380105	Core system	polynomial-c	UNCONFIRMED	sys-libs/libsmbios - insecure RUNPATHs:/usr/sbin/smbios-sys-info-lite	2011-08-25 12:50:02
382321	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3 runtime functionality missing	2011-09-09 23:18:48
383659	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/emboss-6.4 version bump	2012-02-24 18:29:22
383789	Applications	sci-biology	UNCONFIRMED	sci-biology/ncbi-tools++-2010.06.15-r1: libmzXML.so: undefined reference to `ncbi::CMemberInfo::SetN	2013-02-17 08:11:13
389765	Applications	sci-biology	UNCONFIRMED	sci-biology/unafold - add graphic capabilities of mfold_utils	2013-02-17 08:24:03
393311	Ebuilds	sci-biology	UNCONFIRMED	sci-biology/emboss-6.0.1 does not respect CFLAGS="-O?"	2012-02-02 17:39:58
395891	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-memenew-4.0.0-r1 fails to fetch embassy-memenew-4.0.0-r1.tar.g	2012-02-20 14:34:30
396091	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge because of relocation problem	2012-01-01 08:50:47
396657	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge due to missing jkweb.a	2012-02-11 16:02:44
401943	Applications	sci-biology	UNCONFIRMED	sci-biology/transfac-3.2 - tfextract segmentation fault in 0x00007f5df6cc4487 in ajStrDel (Pstr=0x7	2012-02-04 17:26:44
402835	Applications	sci-biology	UNCONFIRMED	sci-biology/ucsc-genome-browser: add -fPIC to CFLAGS and USE=+static-libs	2013-02-17 08:24:19
402849	Applications	sci-biology	UNCONFIRMED	sci-biology/GBrowse: add USE="chado" and its dependencies	2013-02-17 08:26:23
404249	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 multiple slot conflicts.	2012-02-20 14:33:49
405035	Applications	sci-biology	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 fails to emerge because of dependency on embassy-domaina	2012-02-20 14:33:45
406279	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3.1_p4 - add dependency on sci-libs/plplot?	2012-02-29 16:17:32
418625	Applications	sci-biology	UNCONFIRMED	sci-biology/gatk-1.5: error: name clash: sum(Collection) and sum(Collection) have t	2013-02-17 08:28:02
422643	Applications	graphics	UNCONFIRMED	media-gfx/graphviz-2.28.0 sci-biology/phrap-1.080812 - file collision in /usr/bin/cluster	2012-06-21 14:28:59
435270	Library	proaudio	UNCONFIRMED	media-libs/aubio-0.3.2-r1 - SyntaxError: ('invalid syntax', ('/usr/lib64/python2.7/site-packages/aub	2012-09-17 11:44:31
442326	Applications	qemu	UNCONFIRMED	sys-firmware/sgabios-0.1_pre8 - Compile phase failure - ld: i386:x86-64 architecture of input file `	2012-11-08 10:43:27
448124	Development	toolchain	UNCONFIRMED	sys-devel-gcc-4.5.3: internal compiler error on sci-biology/ncbi-tools++-9.0.0/work/ncbi_cxx--9_0_0/	2012-12-26 17:28:43
450322	Applications	sci-biology	UNCONFIRMED	sci-biology/mira-3.4.0.2 - libtool: Version mismatch error. This is libtool 2.4, but the definition	2013-02-17 09:09:47
453156	Applications	cardoe	UNCONFIRMED	sys-firmware/seabios-1.7.2 version bump	2013-01-29 12:28:45
456292	Other	ten	UNCONFIRMED	LiveDVD 20121221: Kernel cannot detect BIOS RAID array	2013-02-10 06:48:14

back

New Packages

- as

- as

2023-03-29

ansible - 7.4.0

Ebuild name:

app-admin/ansible-7.4.0

Description

Model-driven deployment, config management, and command execution framework

Added to portage

2023-03-29

ansible-core - 2.14.4

Ebuild name:

app-admin/ansible-core-2.14.4

Description

Model-driven deployment, config management, and command execution fra

Added to portage

2023-03-29

aspell-pl - 6.0.20220601.0

Ebuild name:

app-dicts/aspell-pl-6.0.20220601.0

Description

Aspell () language dictionary

Added to portage

2023-03-29

garcon - 4.18.1

Ebuild name:

xfce-base/garcon-4.18.1

Description

Xfce's freedesktop.org specification compatible menu implementation library

Added to portage

2023-03-29

gitlab-cli - 1.26.0

Ebuild name:

dev-util/gitlab-cli-1.26.0

Description

the official gitlab command line interface

Added to portage

2023-03-29

idea-community - 2023.1

Ebuild name:

dev-util/idea-community-2023.1

Description

A complete toolset for web, mobile and enterprise development

Added to portage

2023-03-29

kscreen - 5.27.3-r2

Ebuild name:

kde-plasma/kscreen-5.27.3-r2

Description

KDE Plasma screen management

Added to portage

2023-03-29

kwin - 5.27.3-r3

Ebuild name:

kde-plasma/kwin-5.27.3-r3

Description

Flexible, composited Window Manager for windowing systems on Linux

Added to portage

2023-03-29

libxfce4ui - 4.18.3

Ebuild name:

xfce-base/libxfce4ui-4.18.3

Description

Unified widget and session management libs for Xfce

Added to portage

2023-03-29

mutter - 44.0-r1

Ebuild name:

x11-wm/mutter-44.0-r1

Description

GNOME compositing window manager based on Clutter

Added to portage

2023-03-29

openssl - 1.1.1t-r3

Ebuild name:

dev-libs/openssl-1.1.1t-r3

Description

Full-strength general purpose cryptography library (including SSL and TL

Added to portage

2023-03-29

openssl - 3.0.8-r3

Ebuild name:

dev-libs/openssl-3.0.8-r3

Description

Robust, full-featured Open Source Toolkit for the Transport Layer Securit

Added to portage

2023-03-29

openssl - 3.1.0-r2

Ebuild name:

dev-libs/openssl-3.1.0-r2

Description

Robust, full-featured Open Source Toolkit for the Transport Layer Securit

Added to portage

2023-03-29

platformio - 6.1.6-r1

Ebuild name:

dev-embedded/platformio-6.1.6-r1

Description

An open source ecosystem for IoT development

Added to portage

2023-03-29

xfce4-panel - 4.18.3

Ebuild name:

xfce-base/xfce4-panel-4.18.3

Description

Panel for the Xfce desktop environment

Added to portage

2023-03-29

xfce4-session - 4.18.2

Ebuild name:

xfce-base/xfce4-session-4.18.2

Description

A session manager for the Xfce desktop environment

Added to portage

2023-03-29

2023-03-28

accountsservice - 23.13.9

Ebuild name:

sys-apps/accountsservice-23.13.9

Description

D-Bus interfaces for querying and manipulating user account inform

Added to portage

2023-03-28

autoconf - 2.13-r8

Ebuild name:

sys-devel/autoconf-2.13-r8

Description

Used to create autoconfiguration files

Added to portage

2023-03-28

autoconf - 2.69-r9

Ebuild name:

sys-devel/autoconf-2.69-r9

Description

Used to create autoconfiguration files

Added to portage

2023-03-28

autoconf - 2.71-r6

Ebuild name:

sys-devel/autoconf-2.71-r6

Description

Used to create autoconfiguration files

Added to portage

2023-03-28

autoconf - 2.72c-r2

Ebuild name:

sys-devel/autoconf-2.72c-r2

Description

Used to create autoconfiguration files

Added to portage

2023-03-28

automake - 1.11.6-r4

Ebuild name:

sys-devel/automake-1.11.6-r4

Description

Used to generate Makefile.in from Makefile.am

Added to portage

2023-03-28

automake - 1.16.5-r1

Ebuild name:

sys-devel/automake-1.16.5-r1

Description

Used to generate Makefile.in from Makefile.am

Added to portage

2023-03-28

aws-sam-translator - 1.63.0

Ebuild name:

dev-python/aws-sam-translator-1.63.0

Description

A library that transform SAM templates into AWS CloudFormation

Added to portage

2023-03-28

awscli - 1.27.100

Ebuild name:

app-admin/awscli-1.27.100

Description

Universal Command Line Environment for AWS

Added to portage

2023-03-28

awxkit - 21.14.0

Ebuild name:

dev-python/awxkit-21.14.0

Description

Command line interface for Ansible AWX

Added to portage

2023-03-28

borgmatic - 1.7.10

Ebuild name:

app-backup/borgmatic-1.7.10

Description

Automatically create, prune and verify backups with borgbackup

Added to portage

2023-03-28

boto3 - 1.26.100

Ebuild name:

dev-python/boto3-1.26.100

Description

The AWS SDK for Python

Added to portage

2023-03-28

botocore - 1.29.100

Ebuild name:

dev-python/botocore-1.29.100

Description

Low-level, data-driven core of boto 3

Added to portage

2023-03-28

cfn-lint - 0.76.1

Ebuild name:

dev-python/cfn-lint-0.76.1

Description

CloudFormation Linter

Added to portage

2023-03-28

chrome-binary-plugins - 111.0.5563.146

Ebuild name:

www-plugins/chrome-binary-plugins-111.0.5563.146

Description

Binary plugins from Google Chrome for use in Chrom

Added to portage

2023-03-28

chrome-binary-plugins - 112.0.5615.39_beta

Ebuild name:

www-plugins/chrome-binary-plugins-112.0.5615.39_beta

Description

Binary plugins from Google Chrome for use in C

Added to portage

2023-03-28

chrome-binary-plugins - 113.0.5668.0_alpha

Ebuild name:

www-plugins/chrome-binary-plugins-113.0.5668.0_alpha

Description

Binary plugins from Google Chrome for use in C

Added to portage

2023-03-28

chromium - 111.0.5563.110

Ebuild name:

www-client/chromium-111.0.5563.110

Description

Open-source version of Google Chrome web browser

Added to portage

2023-03-28

django-auth-ldap - 4.2.0

Ebuild name:

dev-python/django-auth-ldap-4.2.0

Description

Django LDAP authentication backend

Added to portage

2023-03-28

ena-driver - 2.8.4

Ebuild name:

net-misc/ena-driver-2.8.4

Description

Amazon EC2 Elastic Network Adapter (ENA) kernel driver

Added to portage

2023-03-28

execjs - 2.8.1-r1

Ebuild name:

dev-ruby/execjs-2.8.1-r1

Description

ExecJS lets you run JavaScript code from Ruby

Added to portage

2023-03-28

flux - 0.41.2

Ebuild name:

sys-cluster/flux-0.41.2

Description

Flux is a tool for keeping Kubernetes clusters in sync

Added to portage

2023-03-28

funcy - 2.0

Ebuild name:

dev-python/funcy-2.0

Description

A collection of fancy functional tools focused on practicality

Added to portage

2023-03-28

gitlab-runner - 15.10.0

Ebuild name:

dev-util/gitlab-runner-15.10.0

Description

The official GitLab Runner, written in Go

Added to portage

2023-03-28

google-chrome - 111.0.5563.146

Ebuild name:

www-client/google-chrome-111.0.5563.146

Description

The web browser from Google

Added to portage

2023-03-28

google-chrome-beta - 112.0.5615.39

Ebuild name:

www-client/google-chrome-beta-112.0.5615.39

Description

The web browser from Google

Added to portage

2023-03-28

google-chrome-unstable - 113.0.5668.0

Ebuild name:

www-client/google-chrome-unstable-113.0.5668.0

Description

The web browser from Google

Added to portage

2023-03-28

gprof2dot - 2022.7.29

Ebuild name:

dev-util/gprof2dot-2022.7.29

Description

Converts profiling output to dot graphs

Added to portage

2023-03-28

haproxy - 2.6.12

Ebuild name:

net-proxy/haproxy-2.6.12

Description

A TCP/HTTP reverse proxy for high availability environments

Added to portage

2023-03-28

haproxy - 2.7.6

Ebuild name:

net-proxy/haproxy-2.7.6

Description

A TCP/HTTP reverse proxy for high availability environments

Added to portage

2023-03-28

hypothesis - 6.70.1

Ebuild name:

dev-python/hypothesis-6.70.1

Description

A library for property based testing

Added to portage

2023-03-28

ipyparallel - 8.5.1

Ebuild name:

dev-python/ipyparallel-8.5.1

Description

Interactive Parallel Computing with IPython

Added to portage

2023-03-28

iwd - 2.4

Ebuild name:

net-wireless/iwd-2.4

Description

Wireless daemon for linux

Added to portage

2023-03-28

jdupes - 1.21.3

Ebuild name:

app-misc/jdupes-1.21.3

Description

Identify duplicate files on the filesystem

Added to portage

2023-03-28

jellyfish - 0.11.0

Ebuild name:

dev-python/jellyfish-0.11.0

Description

Python module for doing approximate and phonetic matching of strings

Added to portage

2023-03-28

kramdown - 2.4.0-r1

Ebuild name:

dev-ruby/kramdown-2.4.0-r1

Description

Yet-another-markdown-parser but fast, pure Ruby, using strict syntax def

Added to portage

2023-03-28

kubelogin - 1.27.0

Ebuild name:

sys-cluster/kubelogin-1.27.0

Description

kubectl plugin for Kubernetes OpenID Connect authentication

Added to portage

2023-03-28

kubeseal - 0.20.2

Ebuild name:

sys-cluster/kubeseal-0.20.2

Description

Client-side utility for one-way encrypted secrets in kubernetes

Added to portage

2023-03-28

microsoft-edge - 111.0.1661.54

Ebuild name:

www-client/microsoft-edge-111.0.1661.54

Description

The web browser from Microsoft

Added to portage

2023-03-28

microsoft-edge-beta - 112.0.1722.15

Ebuild name:

www-client/microsoft-edge-beta-112.0.1722.15

Description

The web browser from Microsoft

Added to portage

2023-03-28

microsoft-edge-dev - 113.0.1754.0

Ebuild name:

www-client/microsoft-edge-dev-113.0.1754.0

Description

The web browser from Microsoft

Added to portage

2023-03-28

mkosi - 14_p20230313

Ebuild name:

app-admin/mkosi-14_p20230313

Description

Build Bespoke OS Images

Added to portage

2023-03-28

pandoc-bin - 3.1.2

Ebuild name:

app-text/pandoc-bin-3.1.2

Description

Conversion between markup formats (binary package)

Added to portage

2023-03-28

pcsx2 - 1.7.4280

Ebuild name:

games-emulation/pcsx2-1.7.4280

Description

PlayStation 2 emulator

Added to portage

2023-03-28

pymysql - 1.0.3

Ebuild name:

dev-python/pymysql-1.0.3

Description

Pure-Python MySQL Driver

Added to portage

2023-03-28

pyopenssl - 23.1.1

Ebuild name:

dev-python/pyopenssl-23.1.1

Description

Python interface to the OpenSSL library

Added to portage

2023-03-28

pyproj - 3.5.0

Ebuild name:

dev-python/pyproj-3.5.0

Description

Python interface to the PROJ library

Added to portage

2023-03-28

qmidiroute - 0.4.0-r1

Ebuild name:

media-sound/qmidiroute-0.4.0-r1

Description

QMidiRoute is a filter/router for MIDI events

Added to portage

2023-03-28

qtsass - 0.4.0

Ebuild name:

dev-python/qtsass-0.4.0

Description

Compile SASS files to Qt stylesheets

Added to portage

2023-03-28

ruffle - 0_p20230328

Ebuild name:

app-emulation/ruffle-0_p20230328

Description

Flash Player emulator written in Rust

Added to portage

2023-03-28

scrot - 1.8.1-r2

Ebuild name:

media-gfx/scrot-1.8.1-r2

Description

Screen capture utility using imlib2 library

Added to portage

2023-03-28

snes9x - 1.62.2

Ebuild name:

games-emulation/snes9x-1.62.2

Description

Super Nintendo Entertainment System (SNES) emulator

Added to portage

2023-03-28

src-cli - 5.0.2-r1

Ebuild name:

dev-util/src-cli-5.0.2-r1

Description

command line interface for the Sourcegraph code search tool

Added to portage

2023-03-28

strawberry - 1.0.16

Ebuild name:

media-sound/strawberry-1.0.16

Description

Modern music player and library organizer based on Clementine and Qt

Added to portage

2023-03-28

teco - 7-r2

Ebuild name:

app-emacs/teco-7-r2

Description

TECO interpreter for GNU Emacs

Added to portage

2023-03-28

tempel - 0.6

Ebuild name:

app-emacs/tempel-0.6

Description

Templates with in-buffer field editing for GNU Emacs

Added to portage

2023-03-28

tempel - 0.7

Ebuild name:

app-emacs/tempel-0.7

Description

Templates with in-buffer field editing for GNU Emacs

Added to portage

2023-03-28

template - 3.3b

Ebuild name:

app-emacs/template-3.3b

Description

Use templates, decorate comments, auto-update buffers

Added to portage

2023-03-28

timezone-data - 2023a

Ebuild name:

sys-libs/timezone-data-2023a

Description

Timezone data (/usr/share/zoneinfo) and utilities (tzselect/zic/zdump)

Added to portage

2023-03-28

types-docutils - 0.19.1.7

Ebuild name:

dev-python/types-docutils-0.19.1.7

Description

Typing stubs for docutils

Added to portage

2023-03-28

watchfiles - 0.19.0

Ebuild name:

dev-python/watchfiles-0.19.0

Description

Simple, modern file watching and code reload in Python

Added to portage

2023-03-28

wine-vanilla - 7.0.2

Ebuild name:

app-emulation/wine-vanilla-7.0.2

Description

Free implementation of Windows(tm) on Unix, without external patch

Added to portage

2023-03-28

xom - 1.3.8-r1

Ebuild name:

dev-java/xom-1.3.8-r1

Description

XML Object Model

Added to portage

2023-03-28

zabbix - 5.0.33

Ebuild name:

net-analyzer/zabbix-5.0.33

Description

ZABBIX is software for monitoring of your applications, network and serv

Added to portage

2023-03-28

zabbix - 6.2.9

Ebuild name:

net-analyzer/zabbix-6.2.9

Description

ZABBIX is software for monitoring of your applications, network and serve

Added to portage

2023-03-28

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