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Compile Time Estimator integrated into genlop

You are here: Portage

Details of dev-haskell/bio:

available versions:

releases	alpha	amd64	arm	hppa	ia64	mips	ppc	ppc64	ppc macos	s390	sh	sparc	x86	USE-Flags	dependencies	ebuild warnings

Legend:
+ stable
~ testing
- not available
some ebuild warning depend on specific use-flags or architectures, all ebuild-warnings are shown.

Known bugs:

bug ID	component	assigned to	status	description	last change
366975	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/gbrowse-2.33 fails to install, due to ACCESS VIOLATION	2012-01-04 08:07:11
368473	Applications	sci-biology	UNCONFIRMED	sci-biology/hmmer-3.0 fails to build with "mpi.c:27:23: error: impl_dummy.: No such file or director	2011-06-21 09:31:43
377079	Applications	mmokrejs	UNCONFIRMED	sci-biology/GBrowse-2.39 fails to compile	2011-08-02 20:22:32
380105	Core system	polynomial-c	UNCONFIRMED	sys-libs/libsmbios - insecure RUNPATHs:/usr/sbin/smbios-sys-info-lite	2011-08-25 12:50:02
382321	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3 runtime functionality missing	2011-09-09 23:18:48
383659	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/emboss-6.4 version bump	2012-02-24 18:29:22
383789	Applications	sci-biology	UNCONFIRMED	sci-biology/ncbi-tools++-2010.06.15-r1: libmzXML.so: undefined reference to `ncbi::CMemberInfo::SetN	2013-02-17 08:11:13
389765	Applications	sci-biology	UNCONFIRMED	sci-biology/unafold - add graphic capabilities of mfold_utils	2013-02-17 08:24:03
393311	Ebuilds	sci-biology	UNCONFIRMED	sci-biology/emboss-6.0.1 does not respect CFLAGS="-O?"	2012-02-02 17:39:58
395891	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-memenew-4.0.0-r1 fails to fetch embassy-memenew-4.0.0-r1.tar.g	2012-02-20 14:34:30
396091	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge because of relocation problem	2012-01-01 08:50:47
396657	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge due to missing jkweb.a	2012-02-11 16:02:44
401943	Applications	sci-biology	UNCONFIRMED	sci-biology/transfac-3.2 - tfextract segmentation fault in 0x00007f5df6cc4487 in ajStrDel (Pstr=0x7	2012-02-04 17:26:44
402835	Applications	sci-biology	UNCONFIRMED	sci-biology/ucsc-genome-browser: add -fPIC to CFLAGS and USE=+static-libs	2013-02-17 08:24:19
402849	Applications	sci-biology	UNCONFIRMED	sci-biology/GBrowse: add USE="chado" and its dependencies	2013-02-17 08:26:23
404249	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 multiple slot conflicts.	2012-02-20 14:33:49
405035	Applications	sci-biology	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 fails to emerge because of dependency on embassy-domaina	2012-02-20 14:33:45
406279	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3.1_p4 - add dependency on sci-libs/plplot?	2012-02-29 16:17:32
418625	Applications	sci-biology	UNCONFIRMED	sci-biology/gatk-1.5: error: name clash: sum(Collection) and sum(Collection) have t	2013-02-17 08:28:02
422643	Applications	graphics	UNCONFIRMED	media-gfx/graphviz-2.28.0 sci-biology/phrap-1.080812 - file collision in /usr/bin/cluster	2012-06-21 14:28:59
435270	Library	proaudio	UNCONFIRMED	media-libs/aubio-0.3.2-r1 - SyntaxError: ('invalid syntax', ('/usr/lib64/python2.7/site-packages/aub	2012-09-17 11:44:31
442326	Applications	qemu	UNCONFIRMED	sys-firmware/sgabios-0.1_pre8 - Compile phase failure - ld: i386:x86-64 architecture of input file `	2012-11-08 10:43:27
448124	Development	toolchain	UNCONFIRMED	sys-devel-gcc-4.5.3: internal compiler error on sci-biology/ncbi-tools++-9.0.0/work/ncbi_cxx--9_0_0/	2012-12-26 17:28:43
450322	Applications	sci-biology	UNCONFIRMED	sci-biology/mira-3.4.0.2 - libtool: Version mismatch error. This is libtool 2.4, but the definition	2013-02-17 09:09:47
453156	Applications	cardoe	UNCONFIRMED	sys-firmware/seabios-1.7.2 version bump	2013-01-29 12:28:45
456292	Other	ten	UNCONFIRMED	LiveDVD 20121221: Kernel cannot detect BIOS RAID array	2013-02-10 06:48:14

back

New Packages

- as

- as

2026-02-17

apache-arrow - 23.0.1

Ebuild name:

dev-libs/apache-arrow-23.0.1

Description

A cross-language development platform for in-memory data

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2026-02-17

awscli - 1.44.40

Ebuild name:

app-admin/awscli-1.44.40

Description

Universal Command Line Environment for AWS

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backrefs - 6.2

Ebuild name:

dev-python/backrefs-6.2

Description

Wrapper around re or regex that adds additional back references

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boto3 - 1.42.50

Ebuild name:

dev-python/boto3-1.42.50

Description

The AWS SDK for Python

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botocore - 1.42.50

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deskflow - 1.26.0

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gui-apps/deskflow-1.26.0

Description

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dune - 3.21.1

Ebuild name:

dev-ml/dune-3.21.1

Description

A composable build system for OCaml

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2026-02-17

dune-build-info - 3.21.1

Ebuild name:

dev-ml/dune-build-info-3.21.1

Description

Embed locations informations inside executable and libraries

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2026-02-17

dune-configurator - 3.21.1

Ebuild name:

dev-ml/dune-configurator-3.21.1

Description

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2026-02-17

dune-site - 3.21.1

Ebuild name:

dev-ml/dune-site-3.21.1

Description

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exo - 1.93.0

Ebuild name:

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Description

Command-line tool for everything at Exoscale compute, storage, dns

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2026-02-17

fakeredis - 2.34.0

Ebuild name:

dev-python/fakeredis-2.34.0

Description

Fake implementation of redis API for testing purposes

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2026-02-17

filelock - 3.24.2

Ebuild name:

dev-python/filelock-3.24.2

Description

A platform independent file lock for Python

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firefox - 147.0.4

Ebuild name:

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Description

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flatdict - 4.1.0

Ebuild name:

dev-python/flatdict-4.1.0

Description

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2026-02-17

gamescope - 3.16.20

Ebuild name:

gui-wm/gamescope-3.16.20

Description

Efficient micro-compositor for running games

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2026-02-17

genkernel - 4.3.18

Ebuild name:

sys-kernel/genkernel-4.3.18

Description

Gentoo automatic kernel building scripts

Added to portage

2026-02-17

gentoo-sources - 6.12.73

Ebuild name:

sys-kernel/gentoo-sources-6.12.73

Description

Full sources including the Gentoo patchset for the . kernel tree

Added to portage

2026-02-17

gentoo-sources - 6.18.12

Ebuild name:

sys-kernel/gentoo-sources-6.18.12

Description

Full sources including the Gentoo patchset for the . kernel tree

Added to portage

2026-02-17

gentoo-sources - 6.19.2

Ebuild name:

sys-kernel/gentoo-sources-6.19.2

Description

Full sources including the Gentoo patchset for the . kernel tree

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2026-02-17

gentoo-sources - 6.6.126

Ebuild name:

sys-kernel/gentoo-sources-6.6.126

Description

Full sources including the Gentoo patchset for the . kernel tree

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2026-02-17

godot - 4.6.1

Ebuild name:

dev-games/godot-4.6.1

Description

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2026-02-17

hypothesis - 6.151.9

Ebuild name:

dev-python/hypothesis-6.151.9

Description

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2026-02-17

kdsingleapplication - 1.2.0-r1

Ebuild name:

dev-libs/kdsingleapplication-1.2.0-r1

Description

KDAB's helper class for single-instance policy applications

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2026-02-17

libquotient - 0.9.6

Ebuild name:

net-libs/libquotient-0.9.6

Description

Qt-based SDK to develop applications for Matrix

Added to portage

2026-02-17

mpmath - 1.4.0_beta4

Ebuild name:

dev-python/mpmath-1.4.0_beta4

Description

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Added to portage

2026-02-17

ninja-mode - 1.12.0

Ebuild name:

app-emacs/ninja-mode-1.12.0

Description

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2026-02-17

openpgp-keys-marcusb - 20260217

Ebuild name:

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Description

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2026-02-17

pdfcrack - 0.20-r1

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app-crypt/pdfcrack-0.20-r1

Description

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2026-02-17

pyarrow - 23.0.1

Ebuild name:

dev-python/pyarrow-23.0.1

Description

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2026-02-17

pybind11 - 3.0.2

Ebuild name:

dev-python/pybind11-3.0.2

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2026-02-17

pycountry - 26.2.16

Ebuild name:

dev-python/pycountry-26.2.16

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2026-02-17

pycurl-requests - 0.5.2

Ebuild name:

dev-python/pycurl-requests-0.5.2

Description

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2026-02-17

qtgui - 5.15.18-r1

Ebuild name:

dev-qt/qtgui-5.15.18-r1

Description

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Added to portage

2026-02-17

quixotic - 0.12-r1

Ebuild name:

www-misc/quixotic-0.12-r1

Description

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2026-02-17

redis - 7.2.0

Ebuild name:

dev-python/redis-7.2.0

Description

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2026-02-17

simsimd - 6.5.13

Ebuild name:

dev-python/simsimd-6.5.13

Description

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2026-02-17

sox - 14.4.4.1-r1

Ebuild name:

media-sound/sox-14.4.4.1-r1

Description

The swiss army knife of sound processing programs

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2026-02-17

sox - 14.6.0.4-r1

Ebuild name:

media-sound/sox-14.6.0.4-r1

Description

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tellico - 4.2

Ebuild name:

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Description

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2026-02-17

tifffile - 2026.2.16

Ebuild name:

dev-python/tifffile-2026.2.16

Description

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2026-02-17

tox - 4.36.1

Ebuild name:

dev-python/tox-4.36.1

Description

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2026-02-17

vanilla-sources - 6.12.73

Ebuild name:

sys-kernel/vanilla-sources-6.12.73

Description

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Added to portage

2026-02-17

vanilla-sources - 6.18.12

Ebuild name:

sys-kernel/vanilla-sources-6.18.12

Description

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Added to portage

2026-02-17

vanilla-sources - 6.19.2

Ebuild name:

sys-kernel/vanilla-sources-6.19.2

Description

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Added to portage

2026-02-17

vanilla-sources - 6.6.126

Ebuild name:

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Description

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Added to portage

2026-02-17

varnish - 8.0.0-r1

Ebuild name:

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Description

Varnish is a state-of-the-art, high-performance HTTP accelerator

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2026-02-17

vivaldi - 7.8.3925.66

Ebuild name:

www-client/vivaldi-7.8.3925.66

Description

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2026-02-17

vivaldi-snapshot - 7.9.3950.5

Ebuild name:

www-client/vivaldi-snapshot-7.9.3950.5

Description

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Added to portage

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xdg - 3.21.1

Ebuild name:

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Description

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Added to portage

2026-02-17

2026-02-16

alot - 0.11-r2

Ebuild name:

mail-client/alot-0.11-r2

Description

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2026-02-16

atuin - 18.12.1

Ebuild name:

app-shells/atuin-18.12.1

Description

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cdemu - 3.3.0

Ebuild name:

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Description

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2026-02-16

cdemu-daemon - 3.3.0

Ebuild name:

app-cdr/cdemu-daemon-3.3.0

Description

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2026-02-16

cfv - 3.2.0

Ebuild name:

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Description

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2026-02-16

createrepo_c - 1.2.2-r1

Ebuild name:

app-arch/createrepo_c-1.2.2-r1

Description

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2026-02-16

dist-kernel - 6.12.72

Ebuild name:

virtual/dist-kernel-6.12.72

Description

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2026-02-16

dist-kernel - 6.18.11

Ebuild name:

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Description

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2026-02-16

dist-kernel - 6.6.125

Ebuild name:

virtual/dist-kernel-6.6.125

Description

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Added to portage

2026-02-16

fastfetch - 2.59.0

Ebuild name:

app-misc/fastfetch-2.59.0

Description

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Added to portage

2026-02-16

firefox-bin - 140.7.1

Ebuild name:

www-client/firefox-bin-140.7.1

Description

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Added to portage

2026-02-16

firefox-bin - 147.0.4

Ebuild name:

www-client/firefox-bin-147.0.4

Description

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Added to portage

2026-02-16

freenet - 0.7.5_p1506

Ebuild name:

net-p2p/freenet-0.7.5_p1506

Description

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Added to portage

2026-02-16

gcc - 16.0.1_p20260215

Ebuild name:

sys-devel/gcc-16.0.1_p20260215

Description

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Added to portage

2026-02-16

gcdemu - 3.3.0

Ebuild name:

app-cdr/gcdemu-3.3.0

Description

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Added to portage

2026-02-16

gentoo-kernel - 6.12.72

Ebuild name:

sys-kernel/gentoo-kernel-6.12.72

Description

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Added to portage

2026-02-16

gentoo-kernel - 6.18.11

Ebuild name:

sys-kernel/gentoo-kernel-6.18.11

Description

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Added to portage

2026-02-16

gentoo-kernel - 6.6.125

Ebuild name:

sys-kernel/gentoo-kernel-6.6.125

Description

Linux kernel built with Gentoo patches

Added to portage

2026-02-16

gentoo-kernel-bin - 6.12.72

Ebuild name:

sys-kernel/gentoo-kernel-bin-6.12.72

Description

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Added to portage

2026-02-16

gentoo-kernel-bin - 6.18.11

Ebuild name:

sys-kernel/gentoo-kernel-bin-6.18.11

Description

Pre-built Linux kernel with Gentoo patches

Added to portage

2026-02-16

gentoo-kernel-bin - 6.6.125

Ebuild name:

sys-kernel/gentoo-kernel-bin-6.6.125

Description

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Added to portage

2026-02-16

huggingface_hub - 1.3.7

Ebuild name:

sci-ml/huggingface_hub-1.3.7

Description

a client library to interact with the Hugging Face Hub

Added to portage

2026-02-16

immutabledict - 4.3.1

Ebuild name:

dev-python/immutabledict-4.3.1

Description

An immutable wrapper around dictionaries

Added to portage

2026-02-16

jsonschema-path - 0.4.0_beta6

Ebuild name:

dev-python/jsonschema-path-0.4.0_beta6

Description

JSONSchema Spec with object-oriented paths

Added to portage

2026-02-16

libmirage - 3.3.1

Ebuild name:

dev-libs/libmirage-3.3.1

Description

CD and DVD image access library

Added to portage

2026-02-16

librecad - 2.2.2_alpha1_pre20260215

Ebuild name:

media-gfx/librecad-2.2.2_alpha1_pre20260215

Description

Generic 2D CAD program

Added to portage

2026-02-16

maturin - 1.12.1

Ebuild name:

dev-util/maturin-1.12.1

Description

Build and publish crates with pyo3, rust-cpython and cffi bindings

Added to portage

2026-02-16

maturin - 1.12.2

Ebuild name:

dev-util/maturin-1.12.2

Description

Build and publish crates with pyo3, rust-cpython and cffi bindings

Added to portage

2026-02-16

mumble - 1.6.0_pre20260215

Ebuild name:

net-voip/mumble-1.6.0_pre20260215

Description

Mumble is an open source, low-latency, high quality voice chat so

Added to portage

2026-02-16

murmur - 1.6.0_pre20260215

Ebuild name:

net-voip/murmur-1.6.0_pre20260215

Description

Mumble is an open source, low-latency, high quality voice chat so

Added to portage

2026-02-16

notmuch - 0.40

Ebuild name:

net-mail/notmuch-0.40

Description

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2026-02-16

nzbget - 26.0

Ebuild name:

net-nntp/nzbget-26.0

Description

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2026-02-16

p11-kit - 0.26.2

Ebuild name:

app-crypt/p11-kit-0.26.2

Description

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paperkey - 1.6

Ebuild name:

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Description

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2026-02-16

pathable - 0.5.0_beta6

Ebuild name:

dev-python/pathable-0.5.0_beta6

Description

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Added to portage

2026-02-16

platformdirs - 4.9.2

Ebuild name:

dev-python/platformdirs-4.9.2

Description

A small Python module for determining appropriate platform-specific d

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2026-02-16

prismlauncher - 10.0.5

Ebuild name:

games-action/prismlauncher-10.0.5

Description

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2026-02-16

pymdown-extensions - 10.21

Ebuild name:

dev-python/pymdown-extensions-10.21

Description

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Added to portage

2026-02-16

python-socks - 2.8.1

Ebuild name:

dev-python/python-socks-2.8.1

Description

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Added to portage

2026-02-16

rubber - 1.6.7-r1

Ebuild name:

dev-tex/rubber-1.6.7-r1

Description

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2026-02-16

sipp - 3.7.7

Ebuild name:

net-misc/sipp-3.7.7

Description

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2026-02-16

smb4k - 4.0.6

Ebuild name:

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2026-02-16

stalwart-cli - 0.15.5

Ebuild name:

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Description

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stalwart-mail - 0.15.5

Ebuild name:

net-mail/stalwart-mail-0.15.5

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2026-02-16

tifffile - 2026.2.15

Ebuild name:

dev-python/tifffile-2026.2.15

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2026-02-16

tox - 4.36.0

Ebuild name:

dev-python/tox-4.36.0

Description

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Added to portage

2026-02-16

vanilla-kernel - 6.12.72

Ebuild name:

sys-kernel/vanilla-kernel-6.12.72

Description

Linux kernel built from vanilla upstream sources

Added to portage

2026-02-16

vanilla-kernel - 6.18.11

Ebuild name:

sys-kernel/vanilla-kernel-6.18.11

Description

Linux kernel built from vanilla upstream sources

Added to portage

2026-02-16

vanilla-kernel - 6.6.125

Ebuild name:

sys-kernel/vanilla-kernel-6.6.125

Description

Linux kernel built from vanilla upstream sources

Added to portage

2026-02-16

vimpc - 0.09.2_p20230330

Ebuild name:

media-sound/vimpc-0.09.2_p20230330

Description

ncurses based mpd client with vi-like key bindings

Added to portage

2026-02-16

vlc - 4.0.0_pre20260215

Ebuild name:

media-video/vlc-4.0.0_pre20260215

Description

Media player and framework with support for most multimedia files

Added to portage

2026-02-16

winbox - 4.0.1

Ebuild name:

app-admin/winbox-4.0.1

Description

Management Software for MikroTik RouterOS

Added to portage

2026-02-16

xmltodict - 1.0.3

Ebuild name:

dev-python/xmltodict-1.0.3

Description

Makes working with XML feel like you are working with JSON

Added to portage

2026-02-16

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