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Compile Time Estimator integrated into genlop

You are here: Portage

Details of dev-haskell/bio:

available versions:

releases	alpha	amd64	arm	hppa	ia64	mips	ppc	ppc64	ppc macos	s390	sh	sparc	x86	USE-Flags	dependencies	ebuild warnings

Legend:
+ stable
~ testing
- not available
some ebuild warning depend on specific use-flags or architectures, all ebuild-warnings are shown.

Known bugs:

bug ID	component	assigned to	status	description	last change
366975	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/gbrowse-2.33 fails to install, due to ACCESS VIOLATION	2012-01-04 08:07:11
368473	Applications	sci-biology	UNCONFIRMED	sci-biology/hmmer-3.0 fails to build with "mpi.c:27:23: error: impl_dummy.: No such file or director	2011-06-21 09:31:43
377079	Applications	mmokrejs	UNCONFIRMED	sci-biology/GBrowse-2.39 fails to compile	2011-08-02 20:22:32
380105	Core system	polynomial-c	UNCONFIRMED	sys-libs/libsmbios - insecure RUNPATHs:/usr/sbin/smbios-sys-info-lite	2011-08-25 12:50:02
382321	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3 runtime functionality missing	2011-09-09 23:18:48
383659	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/emboss-6.4 version bump	2012-02-24 18:29:22
383789	Applications	sci-biology	UNCONFIRMED	sci-biology/ncbi-tools++-2010.06.15-r1: libmzXML.so: undefined reference to `ncbi::CMemberInfo::SetN	2013-02-17 08:11:13
389765	Applications	sci-biology	UNCONFIRMED	sci-biology/unafold - add graphic capabilities of mfold_utils	2013-02-17 08:24:03
393311	Ebuilds	sci-biology	UNCONFIRMED	sci-biology/emboss-6.0.1 does not respect CFLAGS="-O?"	2012-02-02 17:39:58
395891	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-memenew-4.0.0-r1 fails to fetch embassy-memenew-4.0.0-r1.tar.g	2012-02-20 14:34:30
396091	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge because of relocation problem	2012-01-01 08:50:47
396657	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge due to missing jkweb.a	2012-02-11 16:02:44
401943	Applications	sci-biology	UNCONFIRMED	sci-biology/transfac-3.2 - tfextract segmentation fault in 0x00007f5df6cc4487 in ajStrDel (Pstr=0x7	2012-02-04 17:26:44
402835	Applications	sci-biology	UNCONFIRMED	sci-biology/ucsc-genome-browser: add -fPIC to CFLAGS and USE=+static-libs	2013-02-17 08:24:19
402849	Applications	sci-biology	UNCONFIRMED	sci-biology/GBrowse: add USE="chado" and its dependencies	2013-02-17 08:26:23
404249	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 multiple slot conflicts.	2012-02-20 14:33:49
405035	Applications	sci-biology	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 fails to emerge because of dependency on embassy-domaina	2012-02-20 14:33:45
406279	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3.1_p4 - add dependency on sci-libs/plplot?	2012-02-29 16:17:32
418625	Applications	sci-biology	UNCONFIRMED	sci-biology/gatk-1.5: error: name clash: sum(Collection) and sum(Collection) have t	2013-02-17 08:28:02
422643	Applications	graphics	UNCONFIRMED	media-gfx/graphviz-2.28.0 sci-biology/phrap-1.080812 - file collision in /usr/bin/cluster	2012-06-21 14:28:59
435270	Library	proaudio	UNCONFIRMED	media-libs/aubio-0.3.2-r1 - SyntaxError: ('invalid syntax', ('/usr/lib64/python2.7/site-packages/aub	2012-09-17 11:44:31
442326	Applications	qemu	UNCONFIRMED	sys-firmware/sgabios-0.1_pre8 - Compile phase failure - ld: i386:x86-64 architecture of input file `	2012-11-08 10:43:27
448124	Development	toolchain	UNCONFIRMED	sys-devel-gcc-4.5.3: internal compiler error on sci-biology/ncbi-tools++-9.0.0/work/ncbi_cxx--9_0_0/	2012-12-26 17:28:43
450322	Applications	sci-biology	UNCONFIRMED	sci-biology/mira-3.4.0.2 - libtool: Version mismatch error. This is libtool 2.4, but the definition	2013-02-17 09:09:47
453156	Applications	cardoe	UNCONFIRMED	sys-firmware/seabios-1.7.2 version bump	2013-01-29 12:28:45
456292	Other	ten	UNCONFIRMED	LiveDVD 20121221: Kernel cannot detect BIOS RAID array	2013-02-10 06:48:14

back

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commons-io - 2.21.0

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commons-lang - 3.20.0

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gns3-gui - 2.2.56

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gns3-server - 2.2.56

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railties - 8.1.2

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smplayer-skins - 20.11.0

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activesupport - 8.1.2

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awkward - 2.8.12

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cachetools - 6.2.5

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cccc - 3.2.0

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clang - 23.0.0_pre20260125

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clang - 23.0.0_pre20260125

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clang-common - 23.0.0_pre20260125

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ensurepip-setuptools - 80.10.2

Ebuild name:

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flang - 23.0.0_pre20260125

Ebuild name:

llvm-core/flang-23.0.0_pre20260125

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flang-rt - 23.0.0_pre20260125

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gnulib - 2026.01.14.22.26.00

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gromacs - 2026.0

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heroic-bin - 2.19.0

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hypothesis - 6.151.0

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incus - 6.21

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jemalloc - 5.3.0-r2

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kdeplasma-addons - 6.5.5-r1

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kimageformats - 6.22.0-r1

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libcxx - 23.0.0_pre20260125

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libcxxabi - 23.0.0_pre20260125

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2026-01-26

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lld - 23.0.0_pre20260125

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lldb - 23.0.0_pre20260125

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2026-01-26

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Ebuild name:

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mlir - 23.0.0_pre20260125

Ebuild name:

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Ebuild name:

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2026-01-26

offload - 23.0.0_pre20260125

Ebuild name:

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2026-01-26

openmp - 23.0.0_pre20260125

Ebuild name:

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2026-01-26

openpgp-keys-gentoo-auth - 20260125

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2026-01-26

openpgp-keys-gentoo-release - 20260125

Ebuild name:

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2026-01-26

osm - 9999

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2026-01-26

pebble - 5.2.0

Ebuild name:

dev-python/pebble-5.2.0

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Added to portage

2026-01-26

pecl-http - 4.3.1

Ebuild name:

dev-php/pecl-http-4.3.1

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Added to portage

2026-01-26

plasma-workspace - 6.5.5-r1

Ebuild name:

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Added to portage

2026-01-26

polly - 23.0.0_pre20260125

Ebuild name:

llvm-core/polly-23.0.0_pre20260125

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Added to portage

2026-01-26

pygresql - 6.2.3

Ebuild name:

dev-python/pygresql-6.2.3

Description

A Python interface for the PostgreSQL database

Added to portage

2026-01-26

pypdf - 6.6.1

Ebuild name:

dev-python/pypdf-6.6.1

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Python library to work with PDF files

Added to portage

2026-01-26

python-multipart - 0.0.22

Ebuild name:

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Added to portage

2026-01-26

rbpdf - 1.21.4

Ebuild name:

dev-ruby/rbpdf-1.21.4

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2026-01-26

redmine - 6.0.7

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2026-01-26

setuptools - 80.10.2

Ebuild name:

dev-python/setuptools-80.10.2

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2026-01-26

slurp - 1.6.0

Ebuild name:

gui-apps/slurp-1.6.0

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ukkonen - 1.1.0

Ebuild name:

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wcwidth - 0.4.0

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2026-01-26

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