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Website translation planned

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Compile Time Estimator integrated into genlop

You are here: Portage

Details of dev-haskell/bio:

available versions:

releases	alpha	amd64	arm	hppa	ia64	mips	ppc	ppc64	ppc macos	s390	sh	sparc	x86	USE-Flags	dependencies	ebuild warnings

Legend:
+ stable
~ testing
- not available
some ebuild warning depend on specific use-flags or architectures, all ebuild-warnings are shown.

Known bugs:

bug ID	component	assigned to	status	description	last change
366975	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/gbrowse-2.33 fails to install, due to ACCESS VIOLATION	2012-01-04 08:07:11
368473	Applications	sci-biology	UNCONFIRMED	sci-biology/hmmer-3.0 fails to build with "mpi.c:27:23: error: impl_dummy.: No such file or director	2011-06-21 09:31:43
377079	Applications	mmokrejs	UNCONFIRMED	sci-biology/GBrowse-2.39 fails to compile	2011-08-02 20:22:32
380105	Core system	polynomial-c	UNCONFIRMED	sys-libs/libsmbios - insecure RUNPATHs:/usr/sbin/smbios-sys-info-lite	2011-08-25 12:50:02
382321	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3 runtime functionality missing	2011-09-09 23:18:48
383659	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/emboss-6.4 version bump	2012-02-24 18:29:22
383789	Applications	sci-biology	UNCONFIRMED	sci-biology/ncbi-tools++-2010.06.15-r1: libmzXML.so: undefined reference to `ncbi::CMemberInfo::SetN	2013-02-17 08:11:13
389765	Applications	sci-biology	UNCONFIRMED	sci-biology/unafold - add graphic capabilities of mfold_utils	2013-02-17 08:24:03
393311	Ebuilds	sci-biology	UNCONFIRMED	sci-biology/emboss-6.0.1 does not respect CFLAGS="-O?"	2012-02-02 17:39:58
395891	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-memenew-4.0.0-r1 fails to fetch embassy-memenew-4.0.0-r1.tar.g	2012-02-20 14:34:30
396091	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge because of relocation problem	2012-01-01 08:50:47
396657	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge due to missing jkweb.a	2012-02-11 16:02:44
401943	Applications	sci-biology	UNCONFIRMED	sci-biology/transfac-3.2 - tfextract segmentation fault in 0x00007f5df6cc4487 in ajStrDel (Pstr=0x7	2012-02-04 17:26:44
402835	Applications	sci-biology	UNCONFIRMED	sci-biology/ucsc-genome-browser: add -fPIC to CFLAGS and USE=+static-libs	2013-02-17 08:24:19
402849	Applications	sci-biology	UNCONFIRMED	sci-biology/GBrowse: add USE="chado" and its dependencies	2013-02-17 08:26:23
404249	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 multiple slot conflicts.	2012-02-20 14:33:49
405035	Applications	sci-biology	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 fails to emerge because of dependency on embassy-domaina	2012-02-20 14:33:45
406279	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3.1_p4 - add dependency on sci-libs/plplot?	2012-02-29 16:17:32
418625	Applications	sci-biology	UNCONFIRMED	sci-biology/gatk-1.5: error: name clash: sum(Collection) and sum(Collection) have t	2013-02-17 08:28:02
422643	Applications	graphics	UNCONFIRMED	media-gfx/graphviz-2.28.0 sci-biology/phrap-1.080812 - file collision in /usr/bin/cluster	2012-06-21 14:28:59
435270	Library	proaudio	UNCONFIRMED	media-libs/aubio-0.3.2-r1 - SyntaxError: ('invalid syntax', ('/usr/lib64/python2.7/site-packages/aub	2012-09-17 11:44:31
442326	Applications	qemu	UNCONFIRMED	sys-firmware/sgabios-0.1_pre8 - Compile phase failure - ld: i386:x86-64 architecture of input file `	2012-11-08 10:43:27
448124	Development	toolchain	UNCONFIRMED	sys-devel-gcc-4.5.3: internal compiler error on sci-biology/ncbi-tools++-9.0.0/work/ncbi_cxx--9_0_0/	2012-12-26 17:28:43
450322	Applications	sci-biology	UNCONFIRMED	sci-biology/mira-3.4.0.2 - libtool: Version mismatch error. This is libtool 2.4, but the definition	2013-02-17 09:09:47
453156	Applications	cardoe	UNCONFIRMED	sys-firmware/seabios-1.7.2 version bump	2013-01-29 12:28:45
456292	Other	ten	UNCONFIRMED	LiveDVD 20121221: Kernel cannot detect BIOS RAID array	2013-02-10 06:48:14

back

New Packages

- as

- as

2026-01-02

eisl - 5.62

Ebuild name:

dev-lang/eisl-5.62

Description

Interpreter and compiler compatible with the ISLisp standard

Added to portage

2026-01-02

nprolog - 4.78

Ebuild name:

dev-lang/nprolog-4.78

Description

Interpreter and compiler to be compatible with Arity/Prolog32

Added to portage

2026-01-02

2026-01-01

amq-protocol - 2.5.0

Ebuild name:

dev-ruby/amq-protocol-2.5.0

Description

An AMQP 0.9.1 serialization library for Ruby

Added to portage

2026-01-01

arti - 1.8.0

Ebuild name:

net-p2p/arti-1.8.0

Description

Implementation of Tor in Rust

Added to portage

2026-01-01

bcrypt-ruby - 3.1.21

Ebuild name:

dev-ruby/bcrypt-ruby-3.1.21

Description

An easy way to keep your users' passwords secure

Added to portage

2026-01-01

cddlib - 094n

Ebuild name:

sci-libs/cddlib-094n

Description

C library implementing the Double Description Method

Added to portage

2026-01-01

chrome-binary-plugins - 143.0.7499.169

Ebuild name:

www-plugins/chrome-binary-plugins-143.0.7499.169

Description

Binary plugins from Google Chrome for use in Chrom

Added to portage

2026-01-01

chrome-binary-plugins - 144.0.7559.31_beta

Ebuild name:

www-plugins/chrome-binary-plugins-144.0.7559.31_beta

Description

Binary plugins from Google Chrome for use in C

Added to portage

2026-01-01

chrome-binary-plugins - 145.0.7587.4_alpha

Ebuild name:

www-plugins/chrome-binary-plugins-145.0.7587.4_alpha

Description

Binary plugins from Google Chrome for use in C

Added to portage

2026-01-01

chromedriver-bin - 143.0.7499.169

Ebuild name:

www-apps/chromedriver-bin-143.0.7499.169

Description

WebDriver for Chrome

Added to portage

2026-01-01

curl - 8.18.0_rc3

Ebuild name:

net-misc/curl-8.18.0_rc3

Description

A Client that groks URLs

Added to portage

2026-01-01

deskflow - 1.25.0

Ebuild name:

gui-apps/deskflow-1.25.0

Description

Share a mouse and keyboard between computers (FOSS version of Synergy)

Added to portage

2026-01-01

fable - 4.28.0

Ebuild name:

dev-dotnet/fable-4.28.0

Description

F to JavaScript, TypeScript, Python, Rust and Dart Compiler

Added to portage

2026-01-01

fonttosfnt - 1.2.5

Ebuild name:

x11-apps/fonttosfnt-1.2.5

Description

X.Org fonttosfnt application

Added to portage

2026-01-01

git-merge-changelog - 1.0

Ebuild name:

dev-vcs/git-merge-changelog-1.0

Description

Git merge driver for GNU style ChangeLog files

Added to portage

2026-01-01

gnatformat - 26.0.0

Ebuild name:

dev-ada/gnatformat-26.0.0

Description

Opinionated code formatter for the Ada language

Added to portage

2026-01-01

google-chrome - 143.0.7499.169

Ebuild name:

www-client/google-chrome-143.0.7499.169

Description

The web browser from Google

Added to portage

2026-01-01

google-chrome-beta - 144.0.7559.31

Ebuild name:

www-client/google-chrome-beta-144.0.7559.31

Description

The web browser from Google

Added to portage

2026-01-01

google-chrome-unstable - 145.0.7587.4

Ebuild name:

www-client/google-chrome-unstable-145.0.7587.4

Description

The web browser from Google

Added to portage

2026-01-01

libsdl2 - 2.32.62

Ebuild name:

media-libs/libsdl2-2.32.62

Description

Simple Direct Media Layer

Added to portage

2026-01-01

libsdl3 - 3.2.30

Ebuild name:

media-libs/libsdl3-3.2.30

Description

Simple Direct Media Layer

Added to portage

2026-01-01

libsdl3 - 3.4.0

Ebuild name:

media-libs/libsdl3-3.4.0

Description

Simple Direct Media Layer

Added to portage

2026-01-01

libva-intel-media-driver - 25.4.6

Ebuild name:

media-libs/libva-intel-media-driver-25.4.6

Description

Intel Media Driver for VA-API (iHD)

Added to portage

2026-01-01

lidarr-bin - 3.1.1.4900

Ebuild name:

www-apps/lidarr-bin-3.1.1.4900

Description

Looks and smells like Sonarr but made for music

Added to portage

2026-01-01

melonds - 1.1-r1

Ebuild name:

games-emulation/melonds-1.1-r1

Description

Nintendo DS emulator, sorta

Added to portage

2026-01-01

microsoft-edge - 143.0.3650.96

Ebuild name:

www-client/microsoft-edge-143.0.3650.96

Description

The web browser from Microsoft

Added to portage

2026-01-01

microsoft-edge-beta - 144.0.3719.23

Ebuild name:

www-client/microsoft-edge-beta-144.0.3719.23

Description

The web browser from Microsoft

Added to portage

2026-01-01

microsoft-edge-beta - 144.0.3719.35

Ebuild name:

www-client/microsoft-edge-beta-144.0.3719.35

Description

The web browser from Microsoft

Added to portage

2026-01-01

microsoft-edge-dev - 145.0.3734.1

Ebuild name:

www-client/microsoft-edge-dev-145.0.3734.1

Description

The web browser from Microsoft

Added to portage

2026-01-01

moonlight - 6.1.0-r3

Ebuild name:

net-misc/moonlight-6.1.0-r3

Description

NVIDIA GameStream (and Sunshine) client

Added to portage

2026-01-01

obs-vkcapture - 1.5.3-r1

Ebuild name:

media-plugins/obs-vkcapture-1.5.3-r1

Description

OBS Linux Vulkan/OpenGL game capture

Added to portage

2026-01-01

opera - 125.0.5729.49

Ebuild name:

www-client/opera-125.0.5729.49

Description

A fast and secure web browser

Added to portage

2026-01-01

opera-beta - 126.0.5750.11

Ebuild name:

www-client/opera-beta-126.0.5750.11

Description

A fast and secure web browser

Added to portage

2026-01-01

opera-developer - 126.0.5748.0

Ebuild name:

www-client/opera-developer-126.0.5748.0

Description

A fast and secure web browser

Added to portage

2026-01-01

outline-magic - 0.9

Ebuild name:

app-emacs/outline-magic-0.9

Description

Outline mode extensions for Emacs

Added to portage

2026-01-01

package-build - 4.0.0

Ebuild name:

app-emacs/package-build-4.0.0

Description

Tools for assembling a package archive

Added to portage

2026-01-01

pauker - 1.8-r5

Ebuild name:

games-puzzle/pauker-1.8-r5

Description

A java based flashcard program

Added to portage

2026-01-01

pymdown-extensions - 10.20

Ebuild name:

dev-python/pymdown-extensions-10.20

Description

Extensions for Python Markdown

Added to portage

2026-01-01

python-gnupg - 0.5.6

Ebuild name:

dev-python/python-gnupg-0.5.6

Description

A Python wrapper for GnuPG

Added to portage

2026-01-01

radarr-bin - 6.1.0.10316

Ebuild name:

www-apps/radarr-bin-6.1.0.10316

Description

A fork of Sonarr to work with movies a la Couchpotato

Added to portage

2026-01-01

rgb - 1.1.1

Ebuild name:

x11-apps/rgb-1.1.1

Description

uncompile an rgb color-name database

Added to portage

2026-01-01

rouge - 4.7.0

Ebuild name:

dev-ruby/rouge-4.7.0

Description

Yet-another-markdown-parser using a strict syntax definition in pure Ruby

Added to portage

2026-01-01

socket-burst-dampener - 1.3.4

Ebuild name:

net-misc/socket-burst-dampener-1.3.4

Description

A daemon that spawns one command per connection, and dampens c

Added to portage

2026-01-01

sourcegit - 2025.41

Ebuild name:

dev-vcs/sourcegit-2025.41

Description

Open Source Git GUI client using .NET AvaloniaUI

Added to portage

2026-01-01

sphinx - 9.1.0

Ebuild name:

dev-python/sphinx-9.1.0

Description

Python documentation generator

Added to portage

2026-01-01

tlfloat - 1.17.1_p20250711

Ebuild name:

dev-cpp/tlfloat-1.17.1_p20250711

Description

C++ template library for floating point operations

Added to portage

2026-01-01

tt-rss - 20251216

Ebuild name:

www-apps/tt-rss-20251216

Description

Tiny Tiny RSS - A web-based news feed (RSS/Atom) aggregator using AJAX

Added to portage

2026-01-01

ty - 0.0.7

Ebuild name:

dev-util/ty-0.0.7

Description

An extremely fast Python type checker and language server, written in Rust

Added to portage

2026-01-01

xauth - 1.1.5

Ebuild name:

x11-apps/xauth-1.1.5

Description

X authority file utility

Added to portage

2026-01-01

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