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Compile Time Estimator integrated into genlop

You are here: Portage

Details of dev-haskell/bio:

available versions:

releases	alpha	amd64	arm	hppa	ia64	mips	ppc	ppc64	ppc macos	s390	sh	sparc	x86	USE-Flags	dependencies	ebuild warnings

Legend:
+ stable
~ testing
- not available
some ebuild warning depend on specific use-flags or architectures, all ebuild-warnings are shown.

Known bugs:

bug ID	component	assigned to	status	description	last change
366975	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/gbrowse-2.33 fails to install, due to ACCESS VIOLATION	2012-01-04 08:07:11
368473	Applications	sci-biology	UNCONFIRMED	sci-biology/hmmer-3.0 fails to build with "mpi.c:27:23: error: impl_dummy.: No such file or director	2011-06-21 09:31:43
377079	Applications	mmokrejs	UNCONFIRMED	sci-biology/GBrowse-2.39 fails to compile	2011-08-02 20:22:32
380105	Core system	polynomial-c	UNCONFIRMED	sys-libs/libsmbios - insecure RUNPATHs:/usr/sbin/smbios-sys-info-lite	2011-08-25 12:50:02
382321	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3 runtime functionality missing	2011-09-09 23:18:48
383659	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/emboss-6.4 version bump	2012-02-24 18:29:22
383789	Applications	sci-biology	UNCONFIRMED	sci-biology/ncbi-tools++-2010.06.15-r1: libmzXML.so: undefined reference to `ncbi::CMemberInfo::SetN	2013-02-17 08:11:13
389765	Applications	sci-biology	UNCONFIRMED	sci-biology/unafold - add graphic capabilities of mfold_utils	2013-02-17 08:24:03
393311	Ebuilds	sci-biology	UNCONFIRMED	sci-biology/emboss-6.0.1 does not respect CFLAGS="-O?"	2012-02-02 17:39:58
395891	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-memenew-4.0.0-r1 fails to fetch embassy-memenew-4.0.0-r1.tar.g	2012-02-20 14:34:30
396091	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge because of relocation problem	2012-01-01 08:50:47
396657	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge due to missing jkweb.a	2012-02-11 16:02:44
401943	Applications	sci-biology	UNCONFIRMED	sci-biology/transfac-3.2 - tfextract segmentation fault in 0x00007f5df6cc4487 in ajStrDel (Pstr=0x7	2012-02-04 17:26:44
402835	Applications	sci-biology	UNCONFIRMED	sci-biology/ucsc-genome-browser: add -fPIC to CFLAGS and USE=+static-libs	2013-02-17 08:24:19
402849	Applications	sci-biology	UNCONFIRMED	sci-biology/GBrowse: add USE="chado" and its dependencies	2013-02-17 08:26:23
404249	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 multiple slot conflicts.	2012-02-20 14:33:49
405035	Applications	sci-biology	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 fails to emerge because of dependency on embassy-domaina	2012-02-20 14:33:45
406279	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3.1_p4 - add dependency on sci-libs/plplot?	2012-02-29 16:17:32
418625	Applications	sci-biology	UNCONFIRMED	sci-biology/gatk-1.5: error: name clash: sum(Collection) and sum(Collection) have t	2013-02-17 08:28:02
422643	Applications	graphics	UNCONFIRMED	media-gfx/graphviz-2.28.0 sci-biology/phrap-1.080812 - file collision in /usr/bin/cluster	2012-06-21 14:28:59
435270	Library	proaudio	UNCONFIRMED	media-libs/aubio-0.3.2-r1 - SyntaxError: ('invalid syntax', ('/usr/lib64/python2.7/site-packages/aub	2012-09-17 11:44:31
442326	Applications	qemu	UNCONFIRMED	sys-firmware/sgabios-0.1_pre8 - Compile phase failure - ld: i386:x86-64 architecture of input file `	2012-11-08 10:43:27
448124	Development	toolchain	UNCONFIRMED	sys-devel-gcc-4.5.3: internal compiler error on sci-biology/ncbi-tools++-9.0.0/work/ncbi_cxx--9_0_0/	2012-12-26 17:28:43
450322	Applications	sci-biology	UNCONFIRMED	sci-biology/mira-3.4.0.2 - libtool: Version mismatch error. This is libtool 2.4, but the definition	2013-02-17 09:09:47
453156	Applications	cardoe	UNCONFIRMED	sys-firmware/seabios-1.7.2 version bump	2013-01-29 12:28:45
456292	Other	ten	UNCONFIRMED	LiveDVD 20121221: Kernel cannot detect BIOS RAID array	2013-02-10 06:48:14

back

New Packages

- as

- as

2026-01-08

age - 1.3.1

Ebuild name:

app-crypt/age-1.3.1

Description

A simple, modern and secure encryption tool (and Go library)

Added to portage

2026-01-08

celestia - 1.7.0_pre20241231-r1

Ebuild name:

sci-astronomy/celestia-1.7.0_pre20241231-r1

Description

OpenGL 3D space simulator

Added to portage

2026-01-08

closure-compiler-bin - 20260104

Ebuild name:

dev-lang/closure-compiler-bin-20260104

Description

JavaScript optimizing compiler

Added to portage

2026-01-08

curtail - 1.14.0

Ebuild name:

media-gfx/curtail-1.14.0

Description

Image compressor, supporting PNG, JPEG and WebP

Added to portage

2026-01-08

fennel - 1.6.1

Ebuild name:

dev-lang/fennel-1.6.1

Description

Lisp-like language that compiles to Lua

Added to portage

2026-01-08

kirigami-addons - 1.11.0

Ebuild name:

dev-libs/kirigami-addons-1.11.0

Description

Visual end user components for Kirigami-based applications

Added to portage

2026-01-08

lfe - 2.2.0-r1

Ebuild name:

dev-lang/lfe-2.2.0-r1

Description

Lisp-flavoured Erlang, a lisp syntax front-end to the Erlang compiler

Added to portage

2026-01-08

limesuite - 23.11.0_p20250714

Ebuild name:

net-wireless/limesuite-23.11.0_p20250714

Description

Driver and GUI for LMS7002M-based SDR platforms

Added to portage

2026-01-08

picard - 3.0_pre20260107

Ebuild name:

media-sound/picard-3.0_pre20260107

Description

Cross-platform music tagger

Added to portage

2026-01-08

poppler - 26.01.0

Ebuild name:

app-text/poppler-26.01.0

Description

PDF rendering library based on the xpdf-3.0 code base

Added to portage

2026-01-08

sbctl - 0.18

Ebuild name:

app-crypt/sbctl-0.18

Description

Secure Boot key manager

Added to portage

2026-01-08

sbsigntools - 0.9.5

Ebuild name:

app-crypt/sbsigntools-0.9.5

Description

Utilities for signing and verifying files for UEFI Secure Boot

Added to portage

2026-01-08

2026-01-07

anyio - 4.12.1

Ebuild name:

dev-python/anyio-4.12.1

Description

Compatibility layer for multiple asynchronous event loop implementations

Added to portage

2026-01-07

avidemux - 2.8.1_p20251019-r1

Ebuild name:

media-video/avidemux-2.8.1_p20251019-r1

Description

Video editor designed for simple cutting, filtering and enc

Added to portage

2026-01-07

awscli - 1.44.13

Ebuild name:

app-admin/awscli-1.44.13

Description

Universal Command Line Environment for AWS

Added to portage

2026-01-07

boto3 - 1.42.23

Ebuild name:

dev-python/boto3-1.42.23

Description

The AWS SDK for Python

Added to portage

2026-01-07

botocore - 1.42.23

Ebuild name:

dev-python/botocore-1.42.23

Description

Low-level, data-driven core of boto 3

Added to portage

2026-01-07

claude-code - 2.0.77

Ebuild name:

dev-util/claude-code-2.0.77

Description

Claude Code - an agentic coding tool by Anthropic

Added to portage

2026-01-07

conan - 2.24.0

Ebuild name:

dev-util/conan-2.24.0

Description

Distributed C/C++ package manager

Added to portage

2026-01-07

cryfs - 1.0.3

Ebuild name:

sys-fs/cryfs-1.0.3

Description

Encrypted FUSE filesystem that conceals metadata

Added to portage

2026-01-07

derper - 1.92.4

Ebuild name:

net-vpn/derper-1.92.4

Description

DERP server for tailscale network

Added to portage

2026-01-07

django - 5.2.10

Ebuild name:

dev-python/django-5.2.10

Description

High-level Python web framework

Added to portage

2026-01-07

django - 6.0.1

Ebuild name:

dev-python/django-6.0.1

Description

High-level Python web framework

Added to portage

2026-01-07

fish - 4.3.3

Ebuild name:

app-shells/fish-4.3.3

Description

Friendly Interactive SHell

Added to portage

2026-01-07

flog - 4.9.4

Ebuild name:

dev-ruby/flog-4.9.4

Description

Flog reports the most tortured code in an easy to read pain report

Added to portage

2026-01-07

genkernel - 4.3.17-r3

Ebuild name:

sys-kernel/genkernel-4.3.17-r3

Description

Gentoo automatic kernel building scripts

Added to portage

2026-01-07

google-auth - 2.47.0

Ebuild name:

dev-python/google-auth-2.47.0

Description

Google Authentication Library

Added to portage

2026-01-07

hackrf-tools - 2026.01.1

Ebuild name:

net-wireless/hackrf-tools-2026.01.1

Description

tools for communicating with HackRF SDR platform

Added to portage

2026-01-07

hcloud - 1.59.0

Ebuild name:

app-admin/hcloud-1.59.0

Description

A command-line interface for Hetzner Cloud

Added to portage

2026-01-07

hypothesis - 6.150.0

Ebuild name:

dev-python/hypothesis-6.150.0

Description

A library for property based testing

Added to portage

2026-01-07

icu - 78.1

Ebuild name:

dev-libs/icu-78.1

Description

International Components for Unicode

Added to portage

2026-01-07

jdk - 27

Ebuild name:

virtual/jdk-27

Description

Virtual for Java Development Kit (JDK)

Added to portage

2026-01-07

jre - 27

Ebuild name:

virtual/jre-27

Description

Virtual for Java Runtime Environment (JRE)

Added to portage

2026-01-07

kraft - 2.0.0

Ebuild name:

app-office/kraft-2.0.0

Description

Quotes and invoices manager for small enterprises

Added to portage

2026-01-07

kube-apiserver - 1.33.7

Ebuild name:

sys-cluster/kube-apiserver-1.33.7

Description

Kubernetes API server

Added to portage

2026-01-07

kube-controller-manager - 1.33.7

Ebuild name:

sys-cluster/kube-controller-manager-1.33.7

Description

Kubernetes Controller Manager

Added to portage

2026-01-07

kube-proxy - 1.33.7

Ebuild name:

sys-cluster/kube-proxy-1.33.7

Description

Kubernetes Proxy service

Added to portage

2026-01-07

kube-scheduler - 1.33.7

Ebuild name:

sys-cluster/kube-scheduler-1.33.7

Description

Kubernetes Scheduler

Added to portage

2026-01-07

kubeadm - 1.33.7

Ebuild name:

sys-cluster/kubeadm-1.33.7

Description

CLI to Easily bootstrap a secure Kubernetes cluster

Added to portage

2026-01-07

kubectl - 1.33.7

Ebuild name:

sys-cluster/kubectl-1.33.7

Description

CLI to run commands against Kubernetes clusters

Added to portage

2026-01-07

kubelet - 1.33.7

Ebuild name:

sys-cluster/kubelet-1.33.7

Description

Kubernetes Node Agent

Added to portage

2026-01-07

ldoc - 1.5.0

Ebuild name:

dev-lua/ldoc-1.5.0

Description

LuaDoc-compatible documentation generation system

Added to portage

2026-01-07

libhackrf - 2026.01.1

Ebuild name:

net-libs/libhackrf-2026.01.1

Description

library for communicating with HackRF SDR platform

Added to portage

2026-01-07

libofx - 0.10.9-r1

Ebuild name:

dev-libs/libofx-0.10.9-r1

Description

Library to support the Open Financial eXchange XML format

Added to portage

2026-01-07

libxdg-basedir - 1.2.3-r1

Ebuild name:

dev-libs/libxdg-basedir-1.2.3-r1

Description

Small library to access XDG Base Directories Specification paths

Added to portage

2026-01-07

lidarr-bin - 3.1.2.4902

Ebuild name:

www-apps/lidarr-bin-3.1.2.4902

Description

Looks and smells like Sonarr but made for music

Added to portage

2026-01-07

micawber - 0.6.2

Ebuild name:

dev-python/micawber-0.6.2

Description

A small library for extracting rich content from urls

Added to portage

2026-01-07

narwhals - 2.15.0

Ebuild name:

dev-python/narwhals-2.15.0

Description

Extremely lightweight compatibility layer between dataframe libraries

Added to portage

2026-01-07

openjdk - 27_alpha3

Ebuild name:

dev-java/openjdk-27_alpha3

Description

Open source implementation of the Java programming language

Added to portage

2026-01-07

openjdk-bin - 26_beta29

Ebuild name:

dev-java/openjdk-bin-26_beta29

Description

Prebuilt Java JDK binaries provided by Eclipse Temurin

Added to portage

2026-01-07

openjdk-bin - 27_alpha3

Ebuild name:

dev-java/openjdk-bin-27_alpha3

Description

Prebuilt Java JDK binaries provided by Eclipse Temurin

Added to portage

2026-01-07

pathspec - 1.0.1

Ebuild name:

dev-python/pathspec-1.0.1

Description

Utility library for gitignore style pattern matching of file paths

Added to portage

2026-01-07

portage - 3.0.75

Ebuild name:

sys-apps/portage-3.0.75

Description

The package management and distribution system for Gentoo

Added to portage

2026-01-07

prowlarr-bin - 2.3.2.5245

Ebuild name:

www-apps/prowlarr-bin-2.3.2.5245

Description

An indexer manager/proxy to integrate with your various PVR apps

Added to portage

2026-01-07

py-spy - 0.4.1

Ebuild name:

dev-util/py-spy-0.4.1

Description

Sampling profiler for Python programs

Added to portage

2026-01-07

pyfuse3 - 3.4.2

Ebuild name:

dev-python/pyfuse3-3.4.2

Description

Python 3 bindings for libfuse 3 with asynchronous API

Added to portage

2026-01-07

pytest-golden - 1.0.1

Ebuild name:

dev-python/pytest-golden-1.0.1

Description

Plugin for pytest that offloads expected outputs to data files

Added to portage

2026-01-07

radarr-bin - 6.1.1.10317

Ebuild name:

www-apps/radarr-bin-6.1.1.10317

Description

A fork of Sonarr to work with movies a la Couchpotato

Added to portage

2026-01-07

rpm - 6.0.1

Ebuild name:

app-arch/rpm-6.0.1

Description

The RPM Package Manager

Added to portage

2026-01-07

sbctl - 0.16

Ebuild name:

app-crypt/sbctl-0.16

Description

Secure Boot key manager

Added to portage

2026-01-07

strscan - 3.1.7

Ebuild name:

dev-ruby/strscan-3.1.7

Description

Provides lexical scanning operations on a String

Added to portage

2026-01-07

tarlz - 0.29

Ebuild name:

app-arch/tarlz-0.29

Description

A parallel archiver combining tar and lzip

Added to portage

2026-01-07

tayga - 0.9.6

Ebuild name:

net-proxy/tayga-0.9.6

Description

Out-of-kernel stateless NAT64 implementation based on TUN

Added to portage

2026-01-07

thor - 1.5.0

Ebuild name:

dev-ruby/thor-1.5.0

Description

Simple and efficient tool for building self-documenting command line utilities

Added to portage

2026-01-07

uv - 0.9.22

Ebuild name:

dev-python/uv-0.9.22

Description

A Python package installer and resolver, written in Rust

Added to portage

2026-01-07

uv-build - 0.9.22

Ebuild name:

dev-python/uv-build-0.9.22

Description

PEP517 uv build backend

Added to portage

2026-01-07

wget2 - 2.2.1

Ebuild name:

net-misc/wget2-2.2.1

Description

GNU Wget2 is a file and recursive website downloader

Added to portage

2026-01-07

xmlschema - 4.3.0

Ebuild name:

dev-python/xmlschema-4.3.0

Description

An XML Schema validator and decoder

Added to portage

2026-01-07

xvfbwrapper - 0.2.17

Ebuild name:

dev-python/xvfbwrapper-0.2.17

Description

Python wrapper for running a display inside X virtual framebuffer

Added to portage

2026-01-07

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