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Compile Time Estimator integrated into genlop

You are here: Portage

Details of dev-haskell/bio:

available versions:

releases	alpha	amd64	arm	hppa	ia64	mips	ppc	ppc64	ppc macos	s390	sh	sparc	x86	USE-Flags	dependencies	ebuild warnings

Legend:
+ stable
~ testing
- not available
some ebuild warning depend on specific use-flags or architectures, all ebuild-warnings are shown.

Known bugs:

bug ID	component	assigned to	status	description	last change
366975	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/gbrowse-2.33 fails to install, due to ACCESS VIOLATION	2012-01-04 08:07:11
368473	Applications	sci-biology	UNCONFIRMED	sci-biology/hmmer-3.0 fails to build with "mpi.c:27:23: error: impl_dummy.: No such file or director	2011-06-21 09:31:43
377079	Applications	mmokrejs	UNCONFIRMED	sci-biology/GBrowse-2.39 fails to compile	2011-08-02 20:22:32
380105	Core system	polynomial-c	UNCONFIRMED	sys-libs/libsmbios - insecure RUNPATHs:/usr/sbin/smbios-sys-info-lite	2011-08-25 12:50:02
382321	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3 runtime functionality missing	2011-09-09 23:18:48
383659	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/emboss-6.4 version bump	2012-02-24 18:29:22
383789	Applications	sci-biology	UNCONFIRMED	sci-biology/ncbi-tools++-2010.06.15-r1: libmzXML.so: undefined reference to `ncbi::CMemberInfo::SetN	2013-02-17 08:11:13
389765	Applications	sci-biology	UNCONFIRMED	sci-biology/unafold - add graphic capabilities of mfold_utils	2013-02-17 08:24:03
393311	Ebuilds	sci-biology	UNCONFIRMED	sci-biology/emboss-6.0.1 does not respect CFLAGS="-O?"	2012-02-02 17:39:58
395891	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-memenew-4.0.0-r1 fails to fetch embassy-memenew-4.0.0-r1.tar.g	2012-02-20 14:34:30
396091	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge because of relocation problem	2012-01-01 08:50:47
396657	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge due to missing jkweb.a	2012-02-11 16:02:44
401943	Applications	sci-biology	UNCONFIRMED	sci-biology/transfac-3.2 - tfextract segmentation fault in 0x00007f5df6cc4487 in ajStrDel (Pstr=0x7	2012-02-04 17:26:44
402835	Applications	sci-biology	UNCONFIRMED	sci-biology/ucsc-genome-browser: add -fPIC to CFLAGS and USE=+static-libs	2013-02-17 08:24:19
402849	Applications	sci-biology	UNCONFIRMED	sci-biology/GBrowse: add USE="chado" and its dependencies	2013-02-17 08:26:23
404249	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 multiple slot conflicts.	2012-02-20 14:33:49
405035	Applications	sci-biology	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 fails to emerge because of dependency on embassy-domaina	2012-02-20 14:33:45
406279	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3.1_p4 - add dependency on sci-libs/plplot?	2012-02-29 16:17:32
418625	Applications	sci-biology	UNCONFIRMED	sci-biology/gatk-1.5: error: name clash: sum(Collection) and sum(Collection) have t	2013-02-17 08:28:02
422643	Applications	graphics	UNCONFIRMED	media-gfx/graphviz-2.28.0 sci-biology/phrap-1.080812 - file collision in /usr/bin/cluster	2012-06-21 14:28:59
435270	Library	proaudio	UNCONFIRMED	media-libs/aubio-0.3.2-r1 - SyntaxError: ('invalid syntax', ('/usr/lib64/python2.7/site-packages/aub	2012-09-17 11:44:31
442326	Applications	qemu	UNCONFIRMED	sys-firmware/sgabios-0.1_pre8 - Compile phase failure - ld: i386:x86-64 architecture of input file `	2012-11-08 10:43:27
448124	Development	toolchain	UNCONFIRMED	sys-devel-gcc-4.5.3: internal compiler error on sci-biology/ncbi-tools++-9.0.0/work/ncbi_cxx--9_0_0/	2012-12-26 17:28:43
450322	Applications	sci-biology	UNCONFIRMED	sci-biology/mira-3.4.0.2 - libtool: Version mismatch error. This is libtool 2.4, but the definition	2013-02-17 09:09:47
453156	Applications	cardoe	UNCONFIRMED	sys-firmware/seabios-1.7.2 version bump	2013-01-29 12:28:45
456292	Other	ten	UNCONFIRMED	LiveDVD 20121221: Kernel cannot detect BIOS RAID array	2013-02-10 06:48:14

back

New Packages

- as

- as

2026-01-16

alsa-lib - 1.2.15.3

Ebuild name:

media-libs/alsa-lib-1.2.15.3

Description

Advanced Linux Sound Architecture Library

Added to portage

2026-01-16

alsa-topology-conf - 1.2.5.1-r1

Ebuild name:

media-libs/alsa-topology-conf-1.2.5.1-r1

Description

ALSA topology configuration files

Added to portage

2026-01-16

alsa-ucm-conf - 1.2.15.3

Ebuild name:

media-libs/alsa-ucm-conf-1.2.15.3

Description

ALSA ucm configuration files

Added to portage

2026-01-16

ansible-core - 2.20.0-r1

Ebuild name:

app-admin/ansible-core-2.20.0-r1

Description

Model-driven deployment, config management, and command execution

Added to portage

2026-01-16

aseprite - 1.3.16.1

Ebuild name:

dev-games/aseprite-1.3.16.1

Description

Animated sprite editor & pixel art tool

Added to portage

2026-01-16

awscli - 1.44.19

Ebuild name:

app-admin/awscli-1.44.19

Description

Universal Command Line Environment for AWS

Added to portage

2026-01-16

babl - 0.1.120

Ebuild name:

media-libs/babl-0.1.120

Description

A dynamic, any to any, pixel format conversion library

Added to portage

2026-01-16

blake3 - 1.8.3

Ebuild name:

dev-libs/blake3-1.8.3

Description

a fast cryptographic hash function

Added to portage

2026-01-16

boto3 - 1.42.29

Ebuild name:

dev-python/boto3-1.42.29

Description

The AWS SDK for Python

Added to portage

2026-01-16

botocore - 1.42.29

Ebuild name:

dev-python/botocore-1.42.29

Description

Low-level, data-driven core of boto 3

Added to portage

2026-01-16

capstone - 6.0.0_alpha6

Ebuild name:

dev-libs/capstone-6.0.0_alpha6

Description

disassembly/disassembler framework + bindings

Added to portage

2026-01-16

cfn-lint - 1.43.3

Ebuild name:

dev-python/cfn-lint-1.43.3

Description

CloudFormation Linter

Added to portage

2026-01-16

django-polymorphic - 4.9.1

Ebuild name:

dev-python/django-polymorphic-4.9.1

Description

Seamless Polymorphic Inheritance for Django Models

Added to portage

2026-01-16

gajim - 2.4.2

Ebuild name:

net-im/gajim-2.4.2

Description

GTK XMPP Client

Added to portage

2026-01-16

google-auth-oauthlib - 1.2.4

Ebuild name:

dev-python/google-auth-oauthlib-1.2.4

Description

Google Authentication Library

Added to portage

2026-01-16

icecast - 2.5.0

Ebuild name:

net-misc/icecast-2.5.0

Description

Opensource alternative to shoutcast that supports mp3, ogg and aac streaming

Added to portage

2026-01-16

ktls-utils - 1.3.0

Ebuild name:

net-misc/ktls-utils-1.3.0

Description

Kernel TLS helper utilities

Added to portage

2026-01-16

libigloo - 0.9.5

Ebuild name:

dev-libs/libigloo-0.9.5

Description

Generic framework for C development - used by the Icecast project

Added to portage

2026-01-16

libnice - 0.1.23

Ebuild name:

net-libs/libnice-0.1.23

Description

Implementation of the Interactice Connectivity Establishment standard (ICE)

Added to portage

2026-01-16

libnvidia-container - 1.18.1

Ebuild name:

sys-libs/libnvidia-container-1.18.1

Description

NVIDIA container runtime library

Added to portage

2026-01-16

ltrace - 0.8.1

Ebuild name:

dev-debug/ltrace-0.8.1

Description

trace library calls made at runtime

Added to portage

2026-01-16

mysql-connector-c - 8.0.36-r1

Ebuild name:

dev-db/mysql-connector-c-8.0.36-r1

Description

C client library for MariaDB/MySQL

Added to portage

2026-01-16

mysql-connector-c - 8.0.41-r1

Ebuild name:

dev-db/mysql-connector-c-8.0.41-r1

Description

C client library for MariaDB/MySQL

Added to portage

2026-01-16

nvidia-container-toolkit - 1.18.1

Ebuild name:

app-containers/nvidia-container-toolkit-1.18.1

Description

NVIDIA container runtime toolkit

Added to portage

2026-01-16

openpgp-keys-alsa - 20260116

Ebuild name:

sec-keys/openpgp-keys-alsa-20260116

Description

OpenPGP keys used by the Alsa Project

Added to portage

2026-01-16

openpgp-keys-dwz - 20260115

Ebuild name:

sec-keys/openpgp-keys-dwz-20260115

Description

OpenPGP key used to sign dwz releases

Added to portage

2026-01-16

openpgp-keys-less - 20260115

Ebuild name:

sec-keys/openpgp-keys-less-20260115

Description

OpenPGP keys used by less

Added to portage

2026-01-16

openpgp-keys-smartmontools - 20260116

Ebuild name:

sec-keys/openpgp-keys-smartmontools-20260116

Description

OpenPGP key used to sign smartmontools releases

Added to portage

2026-01-16

openpgp-keys-tytso - 20260115

Ebuild name:

sec-keys/openpgp-keys-tytso-20260115

Description

OpenPGP keys used by Theodore Ts'o

Added to portage

2026-01-16

osm - 1.12

Ebuild name:

app-emacs/osm-1.12

Description

OpenStreetMap tile-based viewer for GNU Emacs

Added to portage

2026-01-16

packaging - 26.0_rc3

Ebuild name:

dev-python/packaging-26.0_rc3

Description

Core utilities for Python packages

Added to portage

2026-01-16

pbs-installer - 2026.1.14

Ebuild name:

dev-python/pbs-installer-2026.1.14

Description

Installer for Python Build Standalone

Added to portage

2026-01-16

pdns-recursor - 5.3.4

Ebuild name:

net-dns/pdns-recursor-5.3.4

Description

The PowerDNS Recursor

Added to portage

2026-01-16

pipewire - 1.4.9-r3

Ebuild name:

media-video/pipewire-1.4.9-r3

Description

Multimedia processing graphs

Added to portage

2026-01-16

sccache - 0.13.0

Ebuild name:

dev-util/sccache-0.13.0

Description

ccache/distcc like tool with support for rust and cloud storage

Added to portage

2026-01-16

sssd - 2.12.0

Ebuild name:

sys-auth/sssd-2.12.0

Description

System Security Services Daemon provides access to identity and authentication

Added to portage

2026-01-16

systemd-utils - 259

Ebuild name:

sys-apps/systemd-utils-259

Description

Utilities split out from systemd for OpenRC users

Added to portage

2026-01-16

termsyn - 1.8.7-r1

Ebuild name:

media-fonts/termsyn-1.8.7-r1

Description

Monospaced font based on terminus and tamsyn

Added to portage

2026-01-16

trojan - 1.16.0-r4

Ebuild name:

net-proxy/trojan-1.16.0-r4

Description

An unidentifiable mechanism that helps you bypass GFW

Added to portage

2026-01-16

types-psutil - 7.2.1.20260116

Ebuild name:

dev-python/types-psutil-7.2.1.20260116

Description

Typing stubs for psutil

Added to portage

2026-01-16

yara-x - 1.11.0

Ebuild name:

app-forensics/yara-x-1.11.0

Description

A malware identification and classification tool

Added to portage

2026-01-16

zen-sources - 6.18.4

Ebuild name:

sys-kernel/zen-sources-6.18.4

Description

The Zen Kernel Live Sources

Added to portage

2026-01-16

zen-sources - 6.18.5

Ebuild name:

sys-kernel/zen-sources-6.18.5

Description

The Zen Kernel Live Sources

Added to portage

2026-01-16

2026-01-15

alembic - 1.18.1

Ebuild name:

dev-python/alembic-1.18.1

Description

Database migrations tool, written by the author of SQLAlchemy

Added to portage

2026-01-15

atuin - 18.11.0

Ebuild name:

app-shells/atuin-18.11.0

Description

Shell history manager supporting encrypted synchronisation

Added to portage

2026-01-15

awscli - 1.44.18

Ebuild name:

app-admin/awscli-1.44.18

Description

Universal Command Line Environment for AWS

Added to portage

2026-01-15

boto3 - 1.42.28

Ebuild name:

dev-python/boto3-1.42.28

Description

The AWS SDK for Python

Added to portage

2026-01-15

botocore - 1.42.28

Ebuild name:

dev-python/botocore-1.42.28

Description

Low-level, data-driven core of boto 3

Added to portage

2026-01-15

chef-utils - 18.9.4

Ebuild name:

dev-ruby/chef-utils-18.9.4

Description

Basic utility functions for Core Chef Infra development

Added to portage

2026-01-15

claude-code - 2.1.8

Ebuild name:

dev-util/claude-code-2.1.8

Description

Claude Code - an agentic coding tool by Anthropic

Added to portage

2026-01-15

deno-bin - 2.6.5

Ebuild name:

dev-lang/deno-bin-2.6.5

Description

Modern runtime for JavaScript and TypeScript

Added to portage

2026-01-15

dict2xml - 1.7.8

Ebuild name:

dev-python/dict2xml-1.7.8

Description

Small utility to convert a python dictionary into an XML string

Added to portage

2026-01-15

django-polymorphic - 4.10.2

Ebuild name:

dev-python/django-polymorphic-4.10.2

Description

Seamless Polymorphic Inheritance for Django Models

Added to portage

2026-01-15

egl-gbm - 1.1.3

Ebuild name:

gui-libs/egl-gbm-1.1.3

Description

NVIDIA GBM EGL external platform library

Added to portage

2026-01-15

fastfetch - 2.57.1

Ebuild name:

app-misc/fastfetch-2.57.1

Description

Fast neofetch-like system information tool

Added to portage

2026-01-15

fido2 - 2.1.0

Ebuild name:

dev-python/fido2-2.1.0

Description

Python based FIDO 2.0 library

Added to portage

2026-01-15

jupyter-server-terminals - 0.5.4

Ebuild name:

dev-python/jupyter-server-terminals-0.5.4

Description

A Jupyter Server Extension Providing Terminals

Added to portage

2026-01-15

librt - 0.7.8

Ebuild name:

dev-python/librt-0.7.8

Description

Mypyc runtime library

Added to portage

2026-01-15

mattermost-desktop-bin - 6.0.3_rc1

Ebuild name:

net-im/mattermost-desktop-bin-6.0.3_rc1

Description

Mattermost Desktop application

Added to portage

2026-01-15

mothur - 1.48.2

Ebuild name:

sci-biology/mothur-1.48.2

Description

Suite of algorithms for ecological bioinformatics

Added to portage

2026-01-15

oidc-agent - 5.3.4

Ebuild name:

net-misc/oidc-agent-5.3.4

Description

Agent and tools for managing OpenID Connect tokens on the command line

Added to portage

2026-01-15

osm - 1.9

Ebuild name:

app-emacs/osm-1.9

Description

OpenStreetMap tile-based viewer for GNU Emacs

Added to portage

2026-01-15

pandas - 3.0.0_rc2

Ebuild name:

dev-python/pandas-3.0.0_rc2

Description

Powerful data structures for data analysis and statistics

Added to portage

2026-01-15

parser - 3.3.10.1

Ebuild name:

dev-ruby/parser-3.3.10.1

Description

A production-ready Ruby parser written in pure Ruby

Added to portage

2026-01-15

pixi - 0.63.0

Ebuild name:

dev-util/pixi-0.63.0

Description

A package management and workflow tool

Added to portage

2026-01-15

plotly - 6.5.2

Ebuild name:

dev-python/plotly-6.5.2

Description

Browser-based graphing library for Python

Added to portage

2026-01-15

prometheus-client - 0.24.1

Ebuild name:

dev-python/prometheus-client-0.24.1

Description

Python client for the Prometheus monitoring system

Added to portage

2026-01-15

regex - 2026.1.15

Ebuild name:

dev-python/regex-2026.1.15

Description

Alternative regular expression module to replace re

Added to portage

2026-01-15

resolv-replace - 0.2.0

Ebuild name:

dev-ruby/resolv-replace-0.2.0

Description

Replace Socket DNS with Resolv

Added to portage

2026-01-15

ruby - 3.2.10

Ebuild name:

dev-lang/ruby-3.2.10

Description

An object-oriented scripting language

Added to portage

2026-01-15

send2trash - 2.1.0

Ebuild name:

dev-python/send2trash-2.1.0

Description

Sends files to the Trash (or Recycle Bin)

Added to portage

2026-01-15

sphinx-pytest - 0.3.0

Ebuild name:

dev-python/sphinx-pytest-0.3.0

Description

Helpful pytest fixtures for Sphinx extensions

Added to portage

2026-01-15

synapse - 1.145.0

Ebuild name:

net-im/synapse-1.145.0

Description

Reference implementation of Matrix homeserver

Added to portage

2026-01-15

tifffile - 2026.1.14

Ebuild name:

dev-python/tifffile-2026.1.14

Description

Read and write TIFF files

Added to portage

2026-01-15

translate-toolkit - 3.18.1

Ebuild name:

dev-python/translate-toolkit-3.18.1

Description

Toolkit to convert between many translation formats

Added to portage

2026-01-15

trove-classifiers - 2026.1.14.14

Ebuild name:

dev-python/trove-classifiers-2026.1.14.14

Description

Canonical source for classifiers on PyPI (pypi.org)

Added to portage

2026-01-15

xcp - 0.24.2

Ebuild name:

sys-fs/xcp-0.24.2

Description

A 'cp' alternative with user-friendly feedback and performance optimisations

Added to portage

2026-01-15

yamllint - 1.38.0

Ebuild name:

dev-util/yamllint-1.38.0

Description

A linter for YAML files

Added to portage

2026-01-15

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