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Compile Time Estimator integrated into genlop

You are here: Portage

Details of dev-haskell/bio:

available versions:

releases	alpha	amd64	arm	hppa	ia64	mips	ppc	ppc64	ppc macos	s390	sh	sparc	x86	USE-Flags	dependencies	ebuild warnings

Legend:
+ stable
~ testing
- not available
some ebuild warning depend on specific use-flags or architectures, all ebuild-warnings are shown.

Known bugs:

bug ID	component	assigned to	status	description	last change
366975	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/gbrowse-2.33 fails to install, due to ACCESS VIOLATION	2012-01-04 08:07:11
368473	Applications	sci-biology	UNCONFIRMED	sci-biology/hmmer-3.0 fails to build with "mpi.c:27:23: error: impl_dummy.: No such file or director	2011-06-21 09:31:43
377079	Applications	mmokrejs	UNCONFIRMED	sci-biology/GBrowse-2.39 fails to compile	2011-08-02 20:22:32
380105	Core system	polynomial-c	UNCONFIRMED	sys-libs/libsmbios - insecure RUNPATHs:/usr/sbin/smbios-sys-info-lite	2011-08-25 12:50:02
382321	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3 runtime functionality missing	2011-09-09 23:18:48
383659	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/emboss-6.4 version bump	2012-02-24 18:29:22
383789	Applications	sci-biology	UNCONFIRMED	sci-biology/ncbi-tools++-2010.06.15-r1: libmzXML.so: undefined reference to `ncbi::CMemberInfo::SetN	2013-02-17 08:11:13
389765	Applications	sci-biology	UNCONFIRMED	sci-biology/unafold - add graphic capabilities of mfold_utils	2013-02-17 08:24:03
393311	Ebuilds	sci-biology	UNCONFIRMED	sci-biology/emboss-6.0.1 does not respect CFLAGS="-O?"	2012-02-02 17:39:58
395891	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-memenew-4.0.0-r1 fails to fetch embassy-memenew-4.0.0-r1.tar.g	2012-02-20 14:34:30
396091	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge because of relocation problem	2012-01-01 08:50:47
396657	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge due to missing jkweb.a	2012-02-11 16:02:44
401943	Applications	sci-biology	UNCONFIRMED	sci-biology/transfac-3.2 - tfextract segmentation fault in 0x00007f5df6cc4487 in ajStrDel (Pstr=0x7	2012-02-04 17:26:44
402835	Applications	sci-biology	UNCONFIRMED	sci-biology/ucsc-genome-browser: add -fPIC to CFLAGS and USE=+static-libs	2013-02-17 08:24:19
402849	Applications	sci-biology	UNCONFIRMED	sci-biology/GBrowse: add USE="chado" and its dependencies	2013-02-17 08:26:23
404249	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 multiple slot conflicts.	2012-02-20 14:33:49
405035	Applications	sci-biology	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 fails to emerge because of dependency on embassy-domaina	2012-02-20 14:33:45
406279	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3.1_p4 - add dependency on sci-libs/plplot?	2012-02-29 16:17:32
418625	Applications	sci-biology	UNCONFIRMED	sci-biology/gatk-1.5: error: name clash: sum(Collection) and sum(Collection) have t	2013-02-17 08:28:02
422643	Applications	graphics	UNCONFIRMED	media-gfx/graphviz-2.28.0 sci-biology/phrap-1.080812 - file collision in /usr/bin/cluster	2012-06-21 14:28:59
435270	Library	proaudio	UNCONFIRMED	media-libs/aubio-0.3.2-r1 - SyntaxError: ('invalid syntax', ('/usr/lib64/python2.7/site-packages/aub	2012-09-17 11:44:31
442326	Applications	qemu	UNCONFIRMED	sys-firmware/sgabios-0.1_pre8 - Compile phase failure - ld: i386:x86-64 architecture of input file `	2012-11-08 10:43:27
448124	Development	toolchain	UNCONFIRMED	sys-devel-gcc-4.5.3: internal compiler error on sci-biology/ncbi-tools++-9.0.0/work/ncbi_cxx--9_0_0/	2012-12-26 17:28:43
450322	Applications	sci-biology	UNCONFIRMED	sci-biology/mira-3.4.0.2 - libtool: Version mismatch error. This is libtool 2.4, but the definition	2013-02-17 09:09:47
453156	Applications	cardoe	UNCONFIRMED	sys-firmware/seabios-1.7.2 version bump	2013-01-29 12:28:45
456292	Other	ten	UNCONFIRMED	LiveDVD 20121221: Kernel cannot detect BIOS RAID array	2013-02-10 06:48:14

back

New Packages

- as

- as

2026-10-06

aiohttp - 3.14.4

Ebuild name:

dev-python/aiohttp-3.14.4

Description

HTTP client/server for asyncio

Added to portage

2026-10-06

amqp - 5.4.1

Ebuild name:

dev-python/amqp-5.4.1

Description

Low-level AMQP client for Python (fork of amqplib)

Added to portage

2026-10-06

aws-c-s3 - 1.3.1

Ebuild name:

dev-libs/aws-c-s3-1.3.1

Description

AWS C S3 async library

Added to portage

2026-10-06

borgmatic - 2.1.10

Ebuild name:

app-backup/borgmatic-2.1.10

Description

Automatically create, prune and verify backups with borgbackup

Added to portage

2026-10-06

cachetools - 7.2.1

Ebuild name:

dev-python/cachetools-7.2.1

Description

Extensible memoizing collections and decorators

Added to portage

2026-10-06

faker - 40.41.0

Ebuild name:

dev-python/faker-40.41.0

Description

A Python package that generates fake data for you

Added to portage

2026-10-06

filelock - 4.0.12

Ebuild name:

dev-python/filelock-4.0.12

Description

A platform independent file lock for Python

Added to portage

2026-10-06

ggml - 0.26.0

Ebuild name:

sci-ml/ggml-0.26.0

Description

Tensor library for machine learning

Added to portage

2026-10-06

git-bug - 0.11.0

Ebuild name:

dev-util/git-bug-0.11.0

Description

Distributed, offline-first bug tracker embedded in git

Added to portage

2026-10-06

google-api-core - 2.41.0

Ebuild name:

dev-python/google-api-core-2.41.0

Description

Core Library for Google Client Libraries

Added to portage

2026-10-06

google-auth - 2.60.0

Ebuild name:

dev-python/google-auth-2.60.0

Description

Google Authentication Library

Added to portage

2026-10-06

gromacs - 2025.5

Ebuild name:

sci-chemistry/gromacs-2025.5

Description

The ultimate molecular dynamics simulation package

Added to portage

2026-10-06

gromacs - 2026.4

Ebuild name:

sci-chemistry/gromacs-2026.4

Description

The ultimate molecular dynamics simulation package

Added to portage

2026-10-06

hcloud - 2.27.0

Ebuild name:

dev-python/hcloud-2.27.0

Description

Official Hetzner Cloud python library

Added to portage

2026-10-06

hypothesis - 6.168.4

Ebuild name:

dev-python/hypothesis-6.168.4

Description

A library for property based testing

Added to portage

2026-10-06

hypothesis - 6.168.5

Ebuild name:

dev-python/hypothesis-6.168.5

Description

A library for property based testing

Added to portage

2026-10-06

jellyfin-bin - 12.2

Ebuild name:

www-apps/jellyfin-bin-12.2

Description

Jellyfin puts you in control of managing and streaming your media

Added to portage

2026-10-06

jsonpath-ng - 1.9.0

Ebuild name:

dev-python/jsonpath-ng-1.9.0

Description

Python JSONPath Next-Generation

Added to portage

2026-10-06

libcap-ng - 0.9.6

Ebuild name:

sys-libs/libcap-ng-0.9.6

Description

POSIX 1003.1e capabilities

Added to portage

2026-10-06

libfabric - 2.3.1-r1

Ebuild name:

sys-block/libfabric-2.3.1-r1

Description

The Open Fabrics Interfaces (OFI) framework

Added to portage

2026-10-06

mariadb-connector-odbc - 3.1.24

Ebuild name:

dev-db/mariadb-connector-odbc-3.1.24

Description

MariaDB Connector/ODBC

Added to portage

2026-10-06

mariadb-connector-odbc - 3.2.10

Ebuild name:

dev-db/mariadb-connector-odbc-3.2.10

Description

MariaDB Connector/ODBC

Added to portage

2026-10-06

nodejs - 26.10.0-r3

Ebuild name:

net-libs/nodejs-26.10.0-r3

Description

A JavaScript runtime built on Chrome's V8 JavaScript engine

Added to portage

2026-10-06

notebook - 7.5.8

Ebuild name:

dev-python/notebook-7.5.8

Description

Jupyter Interactive Notebook

Added to portage

2026-10-06

protontricks - 1.15.0

Ebuild name:

app-emulation/protontricks-1.15.0

Description

app-emulation/winetricks wrapper for Proton (Steam Play) games

Added to portage

2026-10-06

pycares - 5.1.0

Ebuild name:

dev-python/pycares-5.1.0

Description

Python interface for c-ares

Added to portage

2026-10-06

pytest-httpserver - 1.2.0

Ebuild name:

dev-python/pytest-httpserver-1.2.0

Description

HTTP server for pytest to test HTTP clients

Added to portage

2026-10-06

sphinxcontrib-httpdomain - 2.1.0

Ebuild name:

dev-python/sphinxcontrib-httpdomain-2.1.0

Description

Sphinx domain for documenting HTTP APIs

Added to portage

2026-10-06

svglib - 2.3.0

Ebuild name:

dev-python/svglib-2.3.0

Description

Pure-Python library for reading and converting SVG

Added to portage

2026-10-06

tox - 4.64.9

Ebuild name:

dev-python/tox-4.64.9

Description

virtualenv-based automation of test activities

Added to portage

2026-10-06

urwid - 4.2.5

Ebuild name:

dev-python/urwid-4.2.5

Description

Curses-based user interface library for Python

Added to portage

2026-10-06

2026-10-05

asyncssh - 2.24.1

Ebuild name:

dev-python/asyncssh-2.24.1

Description

Asynchronous SSHv2 client and server library

Added to portage

2026-10-05

b2sdk - 2.13.1

Ebuild name:

dev-python/b2sdk-2.13.1

Description

Library to access Backblaze B2 cloud storage

Added to portage

2026-10-05

bcachefs-tools - 1.39.7

Ebuild name:

sys-fs/bcachefs-tools-1.39.7

Description

Tools for bcachefs

Added to portage

2026-10-05

black - 26.10.0

Ebuild name:

dev-python/black-26.10.0

Description

The uncompromising Python code formatter

Added to portage

2026-10-05

blake3 - 1.8.7

Ebuild name:

dev-libs/blake3-1.8.7

Description

a fast cryptographic hash function

Added to portage

2026-10-05

cppcheck - 2.21.0

Ebuild name:

dev-util/cppcheck-2.21.0

Description

Static analyzer of C/C++ code

Added to portage

2026-10-05

expat - 2.9.0

Ebuild name:

dev-libs/expat-2.9.0

Description

Stream-oriented XML parser library

Added to portage

2026-10-05

filelock - 4.0.11

Ebuild name:

dev-python/filelock-4.0.11

Description

A platform independent file lock for Python

Added to portage

2026-10-05

gcc - 14.4.1_p20261001

Ebuild name:

sys-devel/gcc-14.4.1_p20261001

Description

The GNU Compiler Collection

Added to portage

2026-10-05

gcc - 15.3.1_p20261002

Ebuild name:

sys-devel/gcc-15.3.1_p20261002

Description

The GNU Compiler Collection

Added to portage

2026-10-05

gcc - 16.2.1_p20261003

Ebuild name:

sys-devel/gcc-16.2.1_p20261003

Description

The GNU Compiler Collection

Added to portage

2026-10-05

gcc - 17.0.0_p20261004

Ebuild name:

sys-devel/gcc-17.0.0_p20261004

Description

The GNU Compiler Collection

Added to portage

2026-10-05

git-sources - 7.3_rc6

Ebuild name:

sys-kernel/git-sources-7.3_rc6

Description

The very latest -git version of the Linux kernel

Added to portage

2026-10-05

glycin-loaders - 1.2.4-r1

Ebuild name:

media-libs/glycin-loaders-1.2.4-r1

Description

Loaders for glycin clients (glycin crate or libglycin)

Added to portage

2026-10-05

glycin-loaders - 2.2.1-r1

Ebuild name:

media-libs/glycin-loaders-2.2.1-r1

Description

Loaders for glycin clients (glycin crate or libglycin)

Added to portage

2026-10-05

gmpy2 - 2.3.2

Ebuild name:

dev-python/gmpy2-2.3.2

Description

Python bindings for GMP, MPC, MPFR and MPIR libraries

Added to portage

2026-10-05

hideousdestructor - 5.0.1a

Ebuild name:

games-fps/hideousdestructor-5.0.1a

Description

UZDoom modification for realistic movement, physics, weapons and

Added to portage

2026-10-05

jitterentropy - 3.6.3

Ebuild name:

app-crypt/jitterentropy-3.6.3

Description

Hardware RNG based on CPU timing jitter

Added to portage

2026-10-05

lrzip - 0.7.3

Ebuild name:

app-arch/lrzip-0.7.3

Description

Long Range ZIP or Lzma RZIP optimized for compressing large files

Added to portage

2026-10-05

mesa - 26.2.4

Ebuild name:

media-libs/mesa-26.2.4

Description

OpenGL-like graphic library for Linux

Added to portage

2026-10-05

mesa_clc - 26.2.4

Ebuild name:

dev-util/mesa_clc-26.2.4

Description

mesa_clc tool used for building OpenCL C to SPIR-V

Added to portage

2026-10-05

mongo-c-driver - 1.24.4-r2

Ebuild name:

dev-libs/mongo-c-driver-1.24.4-r2

Description

Client library written in C for MongoDB

Added to portage

2026-10-05

nnn - 5.3

Ebuild name:

app-misc/nnn-5.3

Description

The missing terminal file browser for X

Added to portage

2026-10-05

pbs-installer - 2026.10.3

Ebuild name:

dev-python/pbs-installer-2026.10.3

Description

Installer for Python Build Standalone

Added to portage

2026-10-05

pebble - 5.2.3

Ebuild name:

dev-python/pebble-5.2.3

Description

Threading and multiprocessing eye-candy

Added to portage

2026-10-05

prosody - 13.0.7

Ebuild name:

net-im/prosody-13.0.7

Description

Prosody is a modern XMPP communication server

Added to portage

2026-10-05

pycairo - 1.29.2

Ebuild name:

dev-python/pycairo-1.29.2

Description

Python bindings for the cairo library

Added to portage

2026-10-05

pycryptodome - 3.24.0

Ebuild name:

dev-python/pycryptodome-3.24.0

Description

A self-contained cryptographic library for Python

Added to portage

2026-10-05

pytest-golden - 1.0.2

Ebuild name:

dev-python/pytest-golden-1.0.2

Description

Plugin for pytest that offloads expected outputs to data files

Added to portage

2026-10-05

pytz - 2026.5

Ebuild name:

dev-python/pytz-2026.5

Description

World timezone definitions for Python

Added to portage

2026-10-05

rpds-py - 2026.9.1

Ebuild name:

dev-python/rpds-py-2026.9.1

Description

Python bindings to Rust's persistent data structures (rpds)

Added to portage

2026-10-05

signal-desktop-bin - 8.28.0

Ebuild name:

net-im/signal-desktop-bin-8.28.0

Description

Allows you to send and receive messages of Signal Messenger on you

Added to portage

2026-10-05

thermald - 2.5.13

Ebuild name:

sys-power/thermald-2.5.13

Description

Thermal daemon for Intel architectures

Added to portage

2026-10-05

throttled - 0.13

Ebuild name:

sys-power/throttled-0.13

Description

Daemon to work around throttling issues on some Intel laptops

Added to portage

2026-10-05

tinyssh - 20261001

Ebuild name:

net-misc/tinyssh-20261001

Description

A small SSH server with state-of-the-art cryptography

Added to portage

2026-10-05

virglrenderer - 1.3.0

Ebuild name:

media-libs/virglrenderer-1.3.0

Description

Library used implement a virtual 3D GPU used by qemu

Added to portage

2026-10-05

wcwidth - 0.9.2

Ebuild name:

dev-python/wcwidth-0.9.2

Description

Measures number of Terminal column cells of wide-character codes

Added to portage

2026-10-05

wezterm - 20260929.043349

Ebuild name:

x11-terms/wezterm-20260929.043349

Description

A GPU-accelerated cross-platform terminal emulator and multiplexe

Added to portage

2026-10-05

xorg-proto - 2026.1

Ebuild name:

x11-base/xorg-proto-2026.1

Description

X.Org combined protocol headers

Added to portage

2026-10-05

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