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Compile Time Estimator integrated into genlop

You are here: Portage

Details of dev-haskell/bio:

available versions:

releases	alpha	amd64	arm	hppa	ia64	mips	ppc	ppc64	ppc macos	s390	sh	sparc	x86	USE-Flags	dependencies	ebuild warnings

Legend:
+ stable
~ testing
- not available
some ebuild warning depend on specific use-flags or architectures, all ebuild-warnings are shown.

Known bugs:

bug ID	component	assigned to	status	description	last change
366975	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/gbrowse-2.33 fails to install, due to ACCESS VIOLATION	2012-01-04 08:07:11
368473	Applications	sci-biology	UNCONFIRMED	sci-biology/hmmer-3.0 fails to build with "mpi.c:27:23: error: impl_dummy.: No such file or director	2011-06-21 09:31:43
377079	Applications	mmokrejs	UNCONFIRMED	sci-biology/GBrowse-2.39 fails to compile	2011-08-02 20:22:32
380105	Core system	polynomial-c	UNCONFIRMED	sys-libs/libsmbios - insecure RUNPATHs:/usr/sbin/smbios-sys-info-lite	2011-08-25 12:50:02
382321	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3 runtime functionality missing	2011-09-09 23:18:48
383659	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/emboss-6.4 version bump	2012-02-24 18:29:22
383789	Applications	sci-biology	UNCONFIRMED	sci-biology/ncbi-tools++-2010.06.15-r1: libmzXML.so: undefined reference to `ncbi::CMemberInfo::SetN	2013-02-17 08:11:13
389765	Applications	sci-biology	UNCONFIRMED	sci-biology/unafold - add graphic capabilities of mfold_utils	2013-02-17 08:24:03
393311	Ebuilds	sci-biology	UNCONFIRMED	sci-biology/emboss-6.0.1 does not respect CFLAGS="-O?"	2012-02-02 17:39:58
395891	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-memenew-4.0.0-r1 fails to fetch embassy-memenew-4.0.0-r1.tar.g	2012-02-20 14:34:30
396091	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge because of relocation problem	2012-01-01 08:50:47
396657	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge due to missing jkweb.a	2012-02-11 16:02:44
401943	Applications	sci-biology	UNCONFIRMED	sci-biology/transfac-3.2 - tfextract segmentation fault in 0x00007f5df6cc4487 in ajStrDel (Pstr=0x7	2012-02-04 17:26:44
402835	Applications	sci-biology	UNCONFIRMED	sci-biology/ucsc-genome-browser: add -fPIC to CFLAGS and USE=+static-libs	2013-02-17 08:24:19
402849	Applications	sci-biology	UNCONFIRMED	sci-biology/GBrowse: add USE="chado" and its dependencies	2013-02-17 08:26:23
404249	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 multiple slot conflicts.	2012-02-20 14:33:49
405035	Applications	sci-biology	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 fails to emerge because of dependency on embassy-domaina	2012-02-20 14:33:45
406279	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3.1_p4 - add dependency on sci-libs/plplot?	2012-02-29 16:17:32
418625	Applications	sci-biology	UNCONFIRMED	sci-biology/gatk-1.5: error: name clash: sum(Collection) and sum(Collection) have t	2013-02-17 08:28:02
422643	Applications	graphics	UNCONFIRMED	media-gfx/graphviz-2.28.0 sci-biology/phrap-1.080812 - file collision in /usr/bin/cluster	2012-06-21 14:28:59
435270	Library	proaudio	UNCONFIRMED	media-libs/aubio-0.3.2-r1 - SyntaxError: ('invalid syntax', ('/usr/lib64/python2.7/site-packages/aub	2012-09-17 11:44:31
442326	Applications	qemu	UNCONFIRMED	sys-firmware/sgabios-0.1_pre8 - Compile phase failure - ld: i386:x86-64 architecture of input file `	2012-11-08 10:43:27
448124	Development	toolchain	UNCONFIRMED	sys-devel-gcc-4.5.3: internal compiler error on sci-biology/ncbi-tools++-9.0.0/work/ncbi_cxx--9_0_0/	2012-12-26 17:28:43
450322	Applications	sci-biology	UNCONFIRMED	sci-biology/mira-3.4.0.2 - libtool: Version mismatch error. This is libtool 2.4, but the definition	2013-02-17 09:09:47
453156	Applications	cardoe	UNCONFIRMED	sys-firmware/seabios-1.7.2 version bump	2013-01-29 12:28:45
456292	Other	ten	UNCONFIRMED	LiveDVD 20121221: Kernel cannot detect BIOS RAID array	2013-02-10 06:48:14

back

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blake3 - 1.0.10

Ebuild name:

dev-python/blake3-1.0.10

Description

Python bindings for the BLAKE3 cryptographic hash function

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2026-09-30

boto3 - 1.43.105

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botocore - 1.43.105

Ebuild name:

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cifs-utils - 7.8

Ebuild name:

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Description

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Ebuild name:

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Description

A Free software that gathers information on CPU, motherboard and more

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cramjam - 2.13.0

Ebuild name:

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dlib - 20.0.1

Ebuild name:

sci-libs/dlib-20.0.1

Description

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dropbox - 273.4.4708

Ebuild name:

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2026-09-30

duplicity - 3.2.1

Ebuild name:

app-backup/duplicity-3.2.1

Description

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2026-09-30

filelock - 4.0.7

Ebuild name:

dev-python/filelock-4.0.7

Description

A platform independent file lock for Python

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2026-09-30

flufl-lock - 9.2.0

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dev-python/flufl-lock-9.2.0

Description

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fonttools - 4.66.1

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gallery-dl - 1.32.14

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git-credential-manager - 3.0.0

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google-api-core - 2.40.0

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google-auth-httplib2 - 0.4.3

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2026-09-30

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2026-09-30

googleapis-common-protos - 1.75.5

Ebuild name:

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2026-09-30

gpxsee - 16.16

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grep-ast - 20250508

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2026-09-30

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2026-09-30

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2026-09-30

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2026-09-30

h4x0r - 0.13-r1

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app-emacs/h4x0r-0.13-r1

Description

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2026-09-30

haskell-mode - 17.4

Ebuild name:

app-emacs/haskell-mode-17.4

Description

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2026-09-30

ig - 0.56.1

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2026-09-30

iperf - 3.22

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Description

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ipykernel - 7.4.0

Ebuild name:

dev-python/ipykernel-7.4.0

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joplin-desktop - 3.7.21

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josm-bin - 19613

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2026-09-30

kmscon - 10.0.4

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Description

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2026-09-30

koleo-cli - 0.2.137.38

Ebuild name:

app-misc/koleo-cli-0.2.137.38

Description

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2026-09-30

kvantum - 1.1.8-r1

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Description

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2026-09-30

libasyncns - 0.8-r5

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2026-09-30

libtsm - 4.8.0

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loky - 3.7.0

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2026-09-30

man-pages - 6.17-r2

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man-pages-l10n - 4.32.2

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marginalia - 2.13

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2026-09-30

mergiraf - 0.20.0

Ebuild name:

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Description

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2026-09-30

mirrorselect - 2.8.0

Ebuild name:

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2026-09-30

netdata - 2.11.1

Ebuild name:

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2026-09-30

ntfs3g - 2026.9.28

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openssl - 3.4.8

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openssl - 3.5.9

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openssl - 3.6.5

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2026-09-30

openssl - 4.0.3

Ebuild name:

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2026-09-30

orderless - 1.8

Ebuild name:

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Description

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2026-09-30

owntracks-recorder - 1.0.4

Ebuild name:

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Description

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2026-09-30

pandoc-bin - 3.12

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app-text/pandoc-bin-3.12

Description

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Added to portage

2026-09-30

pbs-installer - 2026.9.29

Ebuild name:

dev-python/pbs-installer-2026.9.29

Description

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2026-09-30

pikepdf - 10.16.0

Ebuild name:

dev-python/pikepdf-10.16.0

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2026-09-30

platformdirs - 4.12.2

Ebuild name:

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2026-09-30

ppp - 2.5.4-r1

Ebuild name:

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2026-09-30

proto-plus - 1.29.0

Ebuild name:

dev-python/proto-plus-1.29.0

Description

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2026-09-30

pylast - 7.2.0

Ebuild name:

dev-python/pylast-7.2.0

Description

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2026-09-30

pylint - 4.1.1

Ebuild name:

dev-python/pylint-4.1.1

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2026-09-30

pyspnego - 0.12.3

Ebuild name:

dev-python/pyspnego-0.12.3

Description

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Added to portage

2026-09-30

python-gnupg - 0.5.7

Ebuild name:

dev-python/python-gnupg-0.5.7

Description

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Added to portage

2026-09-30

python3-discogs-client - 2.10

Ebuild name:

dev-python/python3-discogs-client-2.10

Description

Continuation of the official Python API client for Discogs

Added to portage

2026-09-30

qmapshack - 1.21.1

Ebuild name:

sci-geosciences/qmapshack-1.21.1

Description

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Added to portage

2026-09-30

qmapshack - 1.21.1-r1

Ebuild name:

sci-geosciences/qmapshack-1.21.1-r1

Description

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Added to portage

2026-09-30

qtkeychain - 0.17.0-r1

Ebuild name:

dev-libs/qtkeychain-0.17.0-r1

Description

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Added to portage

2026-09-30

qtkeychain - 0.17.0-r2

Ebuild name:

dev-libs/qtkeychain-0.17.0-r2

Description

Qt API for storing passwords securely

Added to portage

2026-09-30

qtpbfimageplugin - 5.2-r1

Ebuild name:

dev-qt/qtpbfimageplugin-5.2-r1

Description

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Added to portage

2026-09-30

qwt - 6.3.0-r2

Ebuild name:

x11-libs/qwt-6.3.0-r2

Description

2D plotting library for Qt

Added to portage

2026-09-30

radicale - 3.8.1

Ebuild name:

www-apps/radicale-3.8.1

Description

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2026-09-30

ruffle - 0.6.0

Ebuild name:

app-emulation/ruffle-0.6.0

Description

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2026-09-30

sbcl - 2.6.9

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dev-lisp/sbcl-2.6.9

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Ebuild name:

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shell-maker - 0.97.4

Ebuild name:

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sipp - 3.7.9

Ebuild name:

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2026-09-30

sphinx-autodoc-typehints - 3.13.8

Ebuild name:

dev-python/sphinx-autodoc-typehints-3.13.8

Description

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2026-09-30

thunderbird - 157.0

Ebuild name:

mail-client/thunderbird-157.0

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2026-09-30

thunderbird-bin - 157.0

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mail-client/thunderbird-bin-157.0

Description

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2026-09-30

thunderbird-l10n - 157.0

Ebuild name:

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2026-09-30

timezone-data - 2026e

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Added to portage

2026-09-30

tox - 4.64.5

Ebuild name:

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2026-09-30

urwid - 4.2.1

Ebuild name:

dev-python/urwid-4.2.1

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uv - 0.12.21

Ebuild name:

dev-python/uv-0.12.21

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uv-build - 0.12.21

Ebuild name:

dev-python/uv-build-0.12.21

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2026-09-30

virtualenv - 21.14.1

Ebuild name:

dev-python/virtualenv-21.14.1

Description

Virtual Python Environment builder

Added to portage

2026-09-30

webkit-gtk - 2.54.0-r411

Ebuild name:

net-libs/webkit-gtk-2.54.0-r411

Description

Open source web browser engine

Added to portage

2026-09-30

webkit-gtk - 2.54.0-r601

Ebuild name:

net-libs/webkit-gtk-2.54.0-r601

Description

Open source web browser engine

Added to portage

2026-09-30

xarray - 2026.9.0

Ebuild name:

dev-python/xarray-2026.9.0

Description

N-D labeled arrays and datasets in Python

Added to portage

2026-09-30

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