Gentoo.LinuxHowtos.org howtos, tips&tricks and tutorials for gentoo linux

from small one page howto to huge articles all in one place

Other .linuxhowtos.org sites: www.linuxhowtos.org
toolsntoys.linuxhowtos.org

Last additions:

How to make X listen on port 6000

words:

views:

85753

userrating:

average rating: 1.2 (52 votes) (1=very good 6=terrible)

May, 25th 2007:

Words

496

why adblockers are bad

April, 26th 2007:

Words

Website translation planned

Apr, 10th. 2007:

Words

Compile Time Estimator integrated into genlop

You are here: Portage

Details of dev-haskell/bio:

available versions:

releases	alpha	amd64	arm	hppa	ia64	mips	ppc	ppc64	ppc macos	s390	sh	sparc	x86	USE-Flags	dependencies	ebuild warnings

Legend:
+ stable
~ testing
- not available
some ebuild warning depend on specific use-flags or architectures, all ebuild-warnings are shown.

Known bugs:

bug ID	component	assigned to	status	description	last change
366975	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/gbrowse-2.33 fails to install, due to ACCESS VIOLATION	2012-01-04 08:07:11
368473	Applications	sci-biology	UNCONFIRMED	sci-biology/hmmer-3.0 fails to build with "mpi.c:27:23: error: impl_dummy.: No such file or director	2011-06-21 09:31:43
377079	Applications	mmokrejs	UNCONFIRMED	sci-biology/GBrowse-2.39 fails to compile	2011-08-02 20:22:32
380105	Core system	polynomial-c	UNCONFIRMED	sys-libs/libsmbios - insecure RUNPATHs:/usr/sbin/smbios-sys-info-lite	2011-08-25 12:50:02
382321	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3 runtime functionality missing	2011-09-09 23:18:48
383659	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/emboss-6.4 version bump	2012-02-24 18:29:22
383789	Applications	sci-biology	UNCONFIRMED	sci-biology/ncbi-tools++-2010.06.15-r1: libmzXML.so: undefined reference to `ncbi::CMemberInfo::SetN	2013-02-17 08:11:13
389765	Applications	sci-biology	UNCONFIRMED	sci-biology/unafold - add graphic capabilities of mfold_utils	2013-02-17 08:24:03
393311	Ebuilds	sci-biology	UNCONFIRMED	sci-biology/emboss-6.0.1 does not respect CFLAGS="-O?"	2012-02-02 17:39:58
395891	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-memenew-4.0.0-r1 fails to fetch embassy-memenew-4.0.0-r1.tar.g	2012-02-20 14:34:30
396091	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge because of relocation problem	2012-01-01 08:50:47
396657	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge due to missing jkweb.a	2012-02-11 16:02:44
401943	Applications	sci-biology	UNCONFIRMED	sci-biology/transfac-3.2 - tfextract segmentation fault in 0x00007f5df6cc4487 in ajStrDel (Pstr=0x7	2012-02-04 17:26:44
402835	Applications	sci-biology	UNCONFIRMED	sci-biology/ucsc-genome-browser: add -fPIC to CFLAGS and USE=+static-libs	2013-02-17 08:24:19
402849	Applications	sci-biology	UNCONFIRMED	sci-biology/GBrowse: add USE="chado" and its dependencies	2013-02-17 08:26:23
404249	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 multiple slot conflicts.	2012-02-20 14:33:49
405035	Applications	sci-biology	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 fails to emerge because of dependency on embassy-domaina	2012-02-20 14:33:45
406279	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3.1_p4 - add dependency on sci-libs/plplot?	2012-02-29 16:17:32
418625	Applications	sci-biology	UNCONFIRMED	sci-biology/gatk-1.5: error: name clash: sum(Collection) and sum(Collection) have t	2013-02-17 08:28:02
422643	Applications	graphics	UNCONFIRMED	media-gfx/graphviz-2.28.0 sci-biology/phrap-1.080812 - file collision in /usr/bin/cluster	2012-06-21 14:28:59
435270	Library	proaudio	UNCONFIRMED	media-libs/aubio-0.3.2-r1 - SyntaxError: ('invalid syntax', ('/usr/lib64/python2.7/site-packages/aub	2012-09-17 11:44:31
442326	Applications	qemu	UNCONFIRMED	sys-firmware/sgabios-0.1_pre8 - Compile phase failure - ld: i386:x86-64 architecture of input file `	2012-11-08 10:43:27
448124	Development	toolchain	UNCONFIRMED	sys-devel-gcc-4.5.3: internal compiler error on sci-biology/ncbi-tools++-9.0.0/work/ncbi_cxx--9_0_0/	2012-12-26 17:28:43
450322	Applications	sci-biology	UNCONFIRMED	sci-biology/mira-3.4.0.2 - libtool: Version mismatch error. This is libtool 2.4, but the definition	2013-02-17 09:09:47
453156	Applications	cardoe	UNCONFIRMED	sys-firmware/seabios-1.7.2 version bump	2013-01-29 12:28:45
456292	Other	ten	UNCONFIRMED	LiveDVD 20121221: Kernel cannot detect BIOS RAID array	2013-02-10 06:48:14

back

New Packages

- as

- as

2026-06-10

apache - 2.4.68

Ebuild name:

www-servers/apache-2.4.68

Description

The Apache Web Server

Added to portage

2026-06-10

apache-tools - 2.4.68

Ebuild name:

app-admin/apache-tools-2.4.68

Description

Useful Apache tools - htdigest, htpasswd, ab, htdbm

Added to portage

2026-06-10

awscli - 1.45.26

Ebuild name:

app-admin/awscli-1.45.26

Description

Universal Command Line Environment for AWS

Added to portage

2026-06-10

boto3 - 1.43.26

Ebuild name:

dev-python/boto3-1.43.26

Description

The AWS SDK for Python

Added to portage

2026-06-10

botocore - 1.43.26

Ebuild name:

dev-python/botocore-1.43.26

Description

Low-level, data-driven core of boto 3

Added to portage

2026-06-10

chessx - 1.6.10

Ebuild name:

games-board/chessx-1.6.10

Description

Qt-based Chess Database Utility

Added to portage

2026-06-10

cryptography - 48.0.1

Ebuild name:

dev-python/cryptography-48.0.1

Description

Library providing cryptographic recipes and primitives

Added to portage

2026-06-10

digikam - 9.1.0

Ebuild name:

media-gfx/digikam-9.1.0

Description

Digital photo management application

Added to portage

2026-06-10

dracut - 111-r1

Ebuild name:

sys-kernel/dracut-111-r1

Description

Generic initramfs generation tool

Added to portage

2026-06-10

faker - 40.22.0

Ebuild name:

dev-python/faker-40.22.0

Description

A Python package that generates fake data for you

Added to portage

2026-06-10

jupyter-client - 8.9.1

Ebuild name:

dev-python/jupyter-client-8.9.1

Description

Jupyter protocol implementation and client libraries

Added to portage

2026-06-10

kbibtex - 0.10.50_pre20260606

Ebuild name:

app-text/kbibtex-0.10.50_pre20260606

Description

BibTeX editor to edit bibliographies used with LaTeX

Added to portage

2026-06-10

kdesvn - 2.1.0_p20260608

Ebuild name:

dev-vcs/kdesvn-2.1.0_p20260608

Description

Frontend to the subversion vcs

Added to portage

2026-06-10

krename - 5.0.60_pre20260606

Ebuild name:

kde-misc/krename-5.0.60_pre20260606

Description

Powerful batch file renamer

Added to portage

2026-06-10

kronometer - 2.3.70_pre20260606

Ebuild name:

x11-misc/kronometer-2.3.70_pre20260606

Description

Stopwatch application

Added to portage

2026-06-10

macrostep-geiser - 0.2.0_p20210717

Ebuild name:

app-emacs/macrostep-geiser-0.2.0_p20210717

Description

Emacs macrostep back-end powered by geiser

Added to portage

2026-06-10

magit - 4.5.0

Ebuild name:

app-emacs/magit-4.5.0

Description

A Git porcelain inside Emacs

Added to portage

2026-06-10

nodejs - 24.16.0

Ebuild name:

net-libs/nodejs-24.16.0

Description

A JavaScript runtime built on Chrome's V8 JavaScript engine

Added to portage

2026-06-10

openssl - 3.0.21

Ebuild name:

dev-libs/openssl-3.0.21

Description

Robust, full-featured Open Source Toolkit for the Transport Layer Security

Added to portage

2026-06-10

openssl - 3.4.6

Ebuild name:

dev-libs/openssl-3.4.6

Description

Robust, full-featured Open Source Toolkit for the Transport Layer Security (

Added to portage

2026-06-10

openssl - 3.5.7

Ebuild name:

dev-libs/openssl-3.5.7

Description

Robust, full-featured Open Source Toolkit for the Transport Layer Security (

Added to portage

2026-06-10

openssl - 3.6.3

Ebuild name:

dev-libs/openssl-3.6.3

Description

Robust, full-featured Open Source Toolkit for the Transport Layer Security (

Added to portage

2026-06-10

openssl - 4.0.1

Ebuild name:

dev-libs/openssl-4.0.1

Description

Robust, full-featured Open Source Toolkit for the Transport Layer Security (

Added to portage

2026-06-10

openstacksdk - 4.15.0

Ebuild name:

dev-python/openstacksdk-4.15.0

Description

A collection of libraries for building applications to work with Ope

Added to portage

2026-06-10

oslo-utils - 10.1.1

Ebuild name:

dev-python/oslo-utils-10.1.1

Description

Oslo Utility library

Added to portage

2026-06-10

php - 8.4.22

Ebuild name:

dev-lang/php-8.4.22

Description

The PHP language runtime engine

Added to portage

2026-06-10

php - 8.5.7-r1

Ebuild name:

dev-lang/php-8.5.7-r1

Description

The PHP language runtime engine

Added to portage

2026-06-10

pico8 - 0.2.7-r1

Ebuild name:

dev-lang/pico8-0.2.7-r1

Description

Fantasy console for making and playing tiny games and other computer progra

Added to portage

2026-06-10

qgis - 4.0.3

Ebuild name:

sci-geosciences/qgis-4.0.3

Description

User friendly Geographic Information System

Added to portage

2026-06-10

readme-renderer - 45.0

Ebuild name:

dev-python/readme-renderer-45.0

Description

A library for rendering 'readme' descriptions for Warehouse

Added to portage

2026-06-10

sqlglot - 30.10.0

Ebuild name:

dev-python/sqlglot-30.10.0

Description

An easily customizable SQL parser and transpiler

Added to portage

2026-06-10

tqdm - 4.68.2

Ebuild name:

dev-python/tqdm-4.68.2

Description

Add a progress meter to your loops in a second

Added to portage

2026-06-10

yt-dlp - 2026.06.09

Ebuild name:

net-misc/yt-dlp-2026.06.09

Description

youtube-dl fork with additional features and fixes

Added to portage

2026-06-10

2026-06-09

audit - 4.1.4-r3

Ebuild name:

sys-process/audit-4.1.4-r3

Description

Userspace utilities for storing and processing auditing records

Added to portage

2026-06-09

awkward - 2.9.1

Ebuild name:

dev-python/awkward-2.9.1

Description

Manipulate JSON-like data with NumPy-like idioms

Added to portage

2026-06-09

awkward-cpp - 53

Ebuild name:

dev-python/awkward-cpp-53

Description

CPU kernels and compiled extensions for Awkward Array

Added to portage

2026-06-09

awscli - 1.45.25

Ebuild name:

app-admin/awscli-1.45.25

Description

Universal Command Line Environment for AWS

Added to portage

2026-06-09

binutils - 2.46.1

Ebuild name:

sys-devel/binutils-2.46.1

Description

Tools necessary to build programs

Added to portage

2026-06-09

binutils - 2.46.9999

Ebuild name:

sys-devel/binutils-2.46.9999

Description

Tools necessary to build programs

Added to portage

2026-06-09

binutils-hppa64 - 2.46.1

Ebuild name:

sys-devel/binutils-hppa64-2.46.1

Description

Tools necessary to build programs

Added to portage

2026-06-09

binutils-libs - 2.46.1

Ebuild name:

sys-libs/binutils-libs-2.46.1

Description

Core binutils libraries (libbfd, libopcodes, libiberty) for external

Added to portage

2026-06-09

boto3 - 1.43.25

Ebuild name:

dev-python/boto3-1.43.25

Description

The AWS SDK for Python

Added to portage

2026-06-09

botocore - 1.43.25

Ebuild name:

dev-python/botocore-1.43.25

Description

Low-level, data-driven core of boto 3

Added to portage

2026-06-09

discord - 1.0.142

Ebuild name:

net-im/discord-1.0.142

Description

All-in-one voice and text chat for gamers

Added to portage

2026-06-09

dist-kernel - 6.12.93

Ebuild name:

virtual/dist-kernel-6.12.93

Description

Virtual to depend on any Distribution Kernel

Added to portage

2026-06-09

dist-kernel - 6.18.35

Ebuild name:

virtual/dist-kernel-6.18.35

Description

Virtual to depend on any Distribution Kernel

Added to portage

2026-06-09

dist-kernel - 7.0.12

Ebuild name:

virtual/dist-kernel-7.0.12

Description

Virtual to depend on any Distribution Kernel

Added to portage

2026-06-09

flask-cors - 6.0.5

Ebuild name:

dev-python/flask-cors-6.0.5

Description

A Flask extension for Cross Origin Resource Sharing (CORS)

Added to portage

2026-06-09

geckodriver - 0.37.0

Ebuild name:

net-misc/geckodriver-0.37.0

Description

Proxy for using WebDriver clients to interact with Gecko-based browsers

Added to portage

2026-06-09

gentoo-kernel - 6.12.93

Ebuild name:

sys-kernel/gentoo-kernel-6.12.93

Description

Linux kernel built with Gentoo patches

Added to portage

2026-06-09

gentoo-kernel - 6.18.35

Ebuild name:

sys-kernel/gentoo-kernel-6.18.35

Description

Linux kernel built with Gentoo patches

Added to portage

2026-06-09

gentoo-kernel - 7.0.12

Ebuild name:

sys-kernel/gentoo-kernel-7.0.12

Description

Linux kernel built with Gentoo patches

Added to portage

2026-06-09

gentoo-kernel-bin - 6.12.93

Ebuild name:

sys-kernel/gentoo-kernel-bin-6.12.93

Description

Pre-built Linux kernel with Gentoo patches

Added to portage

2026-06-09

gentoo-kernel-bin - 6.18.35

Ebuild name:

sys-kernel/gentoo-kernel-bin-6.18.35

Description

Pre-built Linux kernel with Gentoo patches

Added to portage

2026-06-09

gentoo-kernel-bin - 7.0.12

Ebuild name:

sys-kernel/gentoo-kernel-bin-7.0.12

Description

Pre-built Linux kernel with Gentoo patches

Added to portage

2026-06-09

gentoo-sources - 6.12.93-r1

Ebuild name:

sys-kernel/gentoo-sources-6.12.93-r1

Description

Full sources including the Gentoo patchset for the . kernel tr

Added to portage

2026-06-09

gentoo-sources - 6.18.35-r1

Ebuild name:

sys-kernel/gentoo-sources-6.18.35-r1

Description

Full sources including the Gentoo patchset for the . kernel tr

Added to portage

2026-06-09

gentoo-sources - 7.0.12-r1

Ebuild name:

sys-kernel/gentoo-sources-7.0.12-r1

Description

Full sources including the Gentoo patchset for the . kernel tre

Added to portage

2026-06-09

glibc - 2.43.9999

Ebuild name:

sys-libs/glibc-2.43.9999

Description

GNU libc C library

Added to portage

2026-06-09

handbrake - 1.11.2

Ebuild name:

media-video/handbrake-1.11.2

Description

Open-source, GPL-licensed, multiplatform, multithreaded video transcod

Added to portage

2026-06-09

haruna - 1.7.1-r2

Ebuild name:

media-video/haruna-1.7.1-r2

Description

Video player built with Qt/QML and libmpv

Added to portage

2026-06-09

haruna - 1.8.1-r1

Ebuild name:

media-video/haruna-1.8.1-r1

Description

Video player built with Qt/QML and libmpv

Added to portage

2026-06-09

kdeconnect - 26.04.1-r1

Ebuild name:

kde-misc/kdeconnect-26.04.1-r1

Description

Adds communication between KDE Plasma and your smartphone

Added to portage

2026-06-09

kdeconnect - 26.04.2-r1

Ebuild name:

kde-misc/kdeconnect-26.04.2-r1

Description

Adds communication between KDE Plasma and your smartphone

Added to portage

2026-06-09

lego - 5.2.2

Ebuild name:

app-crypt/lego-5.2.2

Description

Let's Encrypt/ACME client (like certbot or acme.sh) and library written in Go

Added to portage

2026-06-09

libmirage - 3.3.2-r1

Ebuild name:

dev-libs/libmirage-3.3.2-r1

Description

CD and DVD image access library

Added to portage

2026-06-09

magit - 4.5.0-r1

Ebuild name:

app-emacs/magit-4.5.0-r1

Description

A Git porcelain inside Emacs

Added to portage

2026-06-09

magit - 9999

Ebuild name:

app-emacs/magit-9999

Description

A Git porcelain inside Emacs

Added to portage

2026-06-09

magit-popup - 2.13.3-r1

Ebuild name:

app-emacs/magit-popup-2.13.3-r1

Description

Define prefix-infix-suffix command combos

Added to portage

2026-06-09

mailcrypt - 3.5.9-r3

Ebuild name:

app-emacs/mailcrypt-3.5.9-r3

Description

Provides a simple interface to public key cryptography with OpenPGP

Added to portage

2026-06-09

marginalia - 2.10

Ebuild name:

app-emacs/marginalia-2.10

Description

Marginalia in the minibuffer

Added to portage

2026-06-09

opendkim - 9999

Ebuild name:

mail-filter/opendkim-9999

Description

A milter providing DKIM signing and verification

Added to portage

2026-06-09

openpgp-keys-binutils - 20260609

Ebuild name:

sec-keys/openpgp-keys-binutils-20260609

Description

OpenPGP keys used to sign GNU Binutils releases

Added to portage

2026-06-09

paperwork - 2.2.5-r1

Ebuild name:

app-text/paperwork-2.2.5-r1

Description

a personal document manager for scanned documents (and PDFs)

Added to portage

2026-06-09

pdns - 5.1.1

Ebuild name:

net-dns/pdns-5.1.1

Description

The PowerDNS Daemon

Added to portage

2026-06-09

php - 8.5.7

Ebuild name:

dev-lang/php-8.5.7

Description

The PHP language runtime engine

Added to portage

2026-06-09

pikepdf - 10.8.0

Ebuild name:

dev-python/pikepdf-10.8.0

Description

Python library to work with pdf files based on qpdf

Added to portage

2026-06-09

plumbum - 2.0.1

Ebuild name:

dev-python/plumbum-2.0.1

Description

A library for shell script-like programs in python

Added to portage

2026-06-09

postfix - 3.12_pre20260607

Ebuild name:

mail-mta/postfix-3.12_pre20260607

Description

A fast and secure drop-in replacement for sendmail

Added to portage

2026-06-09

pypdf - 6.13.1

Ebuild name:

dev-python/pypdf-6.13.1

Description

Python library to work with PDF files

Added to portage

2026-06-09

pyzotero - 1.13.1

Ebuild name:

dev-python/pyzotero-1.13.1

Description

A Python client for the Zotero API

Added to portage

2026-06-09

sh - 2.3.0

Ebuild name:

dev-python/sh-2.3.0

Description

Python subprocess interface

Added to portage

2026-06-09

signal-desktop-bin - 8.13.0

Ebuild name:

net-im/signal-desktop-bin-8.13.0

Description

Allows you to send and receive messages of Signal Messenger on you

Added to portage

2026-06-09

slixmpp - 1.16.0

Ebuild name:

dev-python/slixmpp-1.16.0

Description

Python 3 library for XMPP

Added to portage

2026-06-09

systemd - 260.2-r1

Ebuild name:

sys-apps/systemd-260.2-r1

Description

System and service manager for Linux

Added to portage

2026-06-09

timu-caribbean-theme - 1.5

Ebuild name:

app-emacs/timu-caribbean-theme-1.5

Description

Color theme with cyan as a dominant color

Added to portage

2026-06-09

timu-caribbean-theme - 9999

Ebuild name:

app-emacs/timu-caribbean-theme-9999

Description

Color theme with cyan as a dominant color

Added to portage

2026-06-09

tornado - 6.5.7

Ebuild name:

dev-python/tornado-6.5.7

Description

Python web framework and asynchronous networking library

Added to portage

2026-06-09

transient - 0.13.4

Ebuild name:

app-emacs/transient-0.13.4

Description

Transient commands abstraction for GNU Emacs

Added to portage

2026-06-09

vanilla-kernel - 6.12.93

Ebuild name:

sys-kernel/vanilla-kernel-6.12.93

Description

Linux kernel built from vanilla upstream sources

Added to portage

2026-06-09

vanilla-kernel - 6.18.35

Ebuild name:

sys-kernel/vanilla-kernel-6.18.35

Description

Linux kernel built from vanilla upstream sources

Added to portage

2026-06-09

vanilla-kernel - 7.0.12

Ebuild name:

sys-kernel/vanilla-kernel-7.0.12

Description

Linux kernel built from vanilla upstream sources

Added to portage

2026-06-09

vanilla-sources - 6.12.93

Ebuild name:

sys-kernel/vanilla-sources-6.12.93

Description

Full sources for the Linux kernel

Added to portage

2026-06-09

vanilla-sources - 6.18.35

Ebuild name:

sys-kernel/vanilla-sources-6.18.35

Description

Full sources for the Linux kernel

Added to portage

2026-06-09

vanilla-sources - 7.0.12

Ebuild name:

sys-kernel/vanilla-sources-7.0.12

Description

Full sources for the Linux kernel

Added to portage

2026-06-09

vertico - 2.10

Ebuild name:

app-emacs/vertico-2.10

Description

Vertical interactive completion

Added to portage

2026-06-09

wcwidth - 0.8.1

Ebuild name:

dev-python/wcwidth-0.8.1

Description

Measures number of Terminal column cells of wide-character codes

Added to portage

2026-06-09

ytmusicapi - 1.12.1-r1

Ebuild name:

dev-python/ytmusicapi-1.12.1-r1

Description

Unofficial API for YouTube Music

Added to portage

2026-06-09

Copyright 2004-2025 Sascha Nitsch Unternehmensberatung GmbH
- Copyright and legal notices -
Time to create this page: 26.1 ms