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Compile Time Estimator integrated into genlop

You are here: Portage

Details of dev-haskell/bio:

available versions:

releases	alpha	amd64	arm	hppa	ia64	mips	ppc	ppc64	ppc macos	s390	sh	sparc	x86	USE-Flags	dependencies	ebuild warnings

Legend:
+ stable
~ testing
- not available
some ebuild warning depend on specific use-flags or architectures, all ebuild-warnings are shown.

Known bugs:

bug ID	component	assigned to	status	description	last change
366975	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/gbrowse-2.33 fails to install, due to ACCESS VIOLATION	2012-01-04 08:07:11
368473	Applications	sci-biology	UNCONFIRMED	sci-biology/hmmer-3.0 fails to build with "mpi.c:27:23: error: impl_dummy.: No such file or director	2011-06-21 09:31:43
377079	Applications	mmokrejs	UNCONFIRMED	sci-biology/GBrowse-2.39 fails to compile	2011-08-02 20:22:32
380105	Core system	polynomial-c	UNCONFIRMED	sys-libs/libsmbios - insecure RUNPATHs:/usr/sbin/smbios-sys-info-lite	2011-08-25 12:50:02
382321	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3 runtime functionality missing	2011-09-09 23:18:48
383659	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/emboss-6.4 version bump	2012-02-24 18:29:22
383789	Applications	sci-biology	UNCONFIRMED	sci-biology/ncbi-tools++-2010.06.15-r1: libmzXML.so: undefined reference to `ncbi::CMemberInfo::SetN	2013-02-17 08:11:13
389765	Applications	sci-biology	UNCONFIRMED	sci-biology/unafold - add graphic capabilities of mfold_utils	2013-02-17 08:24:03
393311	Ebuilds	sci-biology	UNCONFIRMED	sci-biology/emboss-6.0.1 does not respect CFLAGS="-O?"	2012-02-02 17:39:58
395891	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-memenew-4.0.0-r1 fails to fetch embassy-memenew-4.0.0-r1.tar.g	2012-02-20 14:34:30
396091	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge because of relocation problem	2012-01-01 08:50:47
396657	Applications	sci	UNCONFIRMED	[science-overlay] dev-perl/Bio-BigFile-1.06 fails to emerge due to missing jkweb.a	2012-02-11 16:02:44
401943	Applications	sci-biology	UNCONFIRMED	sci-biology/transfac-3.2 - tfextract segmentation fault in 0x00007f5df6cc4487 in ajStrDel (Pstr=0x7	2012-02-04 17:26:44
402835	Applications	sci-biology	UNCONFIRMED	sci-biology/ucsc-genome-browser: add -fPIC to CFLAGS and USE=+static-libs	2013-02-17 08:24:19
402849	Applications	sci-biology	UNCONFIRMED	sci-biology/GBrowse: add USE="chado" and its dependencies	2013-02-17 08:26:23
404249	Applications	sci	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 multiple slot conflicts.	2012-02-20 14:33:49
405035	Applications	sci-biology	UNCONFIRMED	[science overlay] sci-biology/embassy-6.3.1 fails to emerge because of dependency on embassy-domaina	2012-02-20 14:33:45
406279	Applications	sci-biology	UNCONFIRMED	sci-biology/emboss-6.3.1_p4 - add dependency on sci-libs/plplot?	2012-02-29 16:17:32
418625	Applications	sci-biology	UNCONFIRMED	sci-biology/gatk-1.5: error: name clash: sum(Collection) and sum(Collection) have t	2013-02-17 08:28:02
422643	Applications	graphics	UNCONFIRMED	media-gfx/graphviz-2.28.0 sci-biology/phrap-1.080812 - file collision in /usr/bin/cluster	2012-06-21 14:28:59
435270	Library	proaudio	UNCONFIRMED	media-libs/aubio-0.3.2-r1 - SyntaxError: ('invalid syntax', ('/usr/lib64/python2.7/site-packages/aub	2012-09-17 11:44:31
442326	Applications	qemu	UNCONFIRMED	sys-firmware/sgabios-0.1_pre8 - Compile phase failure - ld: i386:x86-64 architecture of input file `	2012-11-08 10:43:27
448124	Development	toolchain	UNCONFIRMED	sys-devel-gcc-4.5.3: internal compiler error on sci-biology/ncbi-tools++-9.0.0/work/ncbi_cxx--9_0_0/	2012-12-26 17:28:43
450322	Applications	sci-biology	UNCONFIRMED	sci-biology/mira-3.4.0.2 - libtool: Version mismatch error. This is libtool 2.4, but the definition	2013-02-17 09:09:47
453156	Applications	cardoe	UNCONFIRMED	sys-firmware/seabios-1.7.2 version bump	2013-01-29 12:28:45
456292	Other	ten	UNCONFIRMED	LiveDVD 20121221: Kernel cannot detect BIOS RAID array	2013-02-10 06:48:14

back

New Packages

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2026-07-27

cares-tools - 0.4

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c-ares tools host, nslookup

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gamescope - 3.16.25-r1

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git-sources - 7.2_rc5

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libxmp - 4.7.2

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Library that renders module files to PCM data

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action_text-trix - 2.1.16-r1

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actioncable - 8.0.4-r1

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actioncable - 8.1.2-r1

Ebuild name:

dev-ruby/actioncable-8.1.2-r1

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actionmailbox - 8.0.4-r1

Ebuild name:

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actionmailbox - 8.1.2-r1

Ebuild name:

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Description

Framework for designing email-service layers

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2026-07-26

actionmailer - 8.0.4-r1

Ebuild name:

dev-ruby/actionmailer-8.0.4-r1

Description

Framework for designing email-service layers

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actionmailer - 8.1.2-r1

Ebuild name:

dev-ruby/actionmailer-8.1.2-r1

Description

Framework for designing email-service layers

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actionpack - 8.0.4-r1

Ebuild name:

dev-ruby/actionpack-8.0.4-r1

Description

Eases web-request routing, handling, and response

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2026-07-26

actionpack - 8.1.2-r1

Ebuild name:

dev-ruby/actionpack-8.1.2-r1

Description

Eases web-request routing, handling, and response

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actiontext - 8.0.4-r1

Ebuild name:

dev-ruby/actiontext-8.0.4-r1

Description

Edit and display rich text in Rails applications

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2026-07-26

actiontext - 8.1.2-r1

Ebuild name:

dev-ruby/actiontext-8.1.2-r1

Description

Edit and display rich text in Rails applications

Added to portage

2026-07-26

actionview - 8.0.4-r1

Ebuild name:

dev-ruby/actionview-8.0.4-r1

Description

Simple, battle-tested conventions and helpers for building web pages

Added to portage

2026-07-26

actionview - 8.1.2-r1

Ebuild name:

dev-ruby/actionview-8.1.2-r1

Description

Simple, battle-tested conventions and helpers for building web pages

Added to portage

2026-07-26

activejob - 8.0.4-r1

Ebuild name:

dev-ruby/activejob-8.0.4-r1

Description

Job framework with pluggable queues

Added to portage

2026-07-26

activejob - 8.1.2-r1

Ebuild name:

dev-ruby/activejob-8.1.2-r1

Description

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Added to portage

2026-07-26

activemodel - 8.0.4-r1

Ebuild name:

dev-ruby/activemodel-8.0.4-r1

Description

Toolkit for building modeling frameworks like Active Record and Activ

Added to portage

2026-07-26

activemodel - 8.1.2-r1

Ebuild name:

dev-ruby/activemodel-8.1.2-r1

Description

Toolkit for building modeling frameworks like Active Record and Activ

Added to portage

2026-07-26

activerecord - 8.0.4-r1

Ebuild name:

dev-ruby/activerecord-8.0.4-r1

Description

Implements the ActiveRecord pattern (Fowler, PoEAA) for ORM

Added to portage

2026-07-26

activerecord - 8.1.2-r1

Ebuild name:

dev-ruby/activerecord-8.1.2-r1

Description

Implements the ActiveRecord pattern (Fowler, PoEAA) for ORM

Added to portage

2026-07-26

activestorage - 8.0.4-r1

Ebuild name:

dev-ruby/activestorage-8.0.4-r1

Description

Attach cloud and local files in Rails applications

Added to portage

2026-07-26

activestorage - 8.1.2-r1

Ebuild name:

dev-ruby/activestorage-8.1.2-r1

Description

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Added to portage

2026-07-26

bitwarden-cli-bin - 2026.7.0

Ebuild name:

app-admin/bitwarden-cli-bin-2026.7.0

Description

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Added to portage

2026-07-26

bogus - 0.1.7-r1

Ebuild name:

dev-ruby/bogus-0.1.7-r1

Description

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Added to portage

2026-07-26

carbon-c-relay - 3.9

Ebuild name:

app-misc/carbon-c-relay-3.9

Description

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2026-07-26

dalli - 4.3.3

Ebuild name:

dev-ruby/dalli-4.3.3

Description

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Added to portage

2026-07-26

dalli - 5.0.5

Ebuild name:

dev-ruby/dalli-5.0.5

Description

A high performance pure Ruby client for accessing memcached servers

Added to portage

2026-07-26

dconf - 0.49.0

Ebuild name:

gnome-base/dconf-0.49.0

Description

Simple low-level configuration system

Added to portage

2026-07-26

diff-lcs - 2.0.0

Ebuild name:

dev-ruby/diff-lcs-2.0.0

Description

Use the McIlroy-Hunt LCS algorithm to compute differences

Added to portage

2026-07-26

discord - 1.0.150

Ebuild name:

net-im/discord-1.0.150

Description

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2026-07-26

dolphin - 2606-r1

Ebuild name:

games-emulation/dolphin-2606-r1

Description

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Added to portage

2026-07-26

erb - 6.0.6

Ebuild name:

dev-ruby/erb-6.0.6

Description

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Added to portage

2026-07-26

flatpak-builder - 1.4.10

Ebuild name:

dev-util/flatpak-builder-1.4.10

Description

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Added to portage

2026-07-26

gjs - 1.88.1

Ebuild name:

dev-libs/gjs-1.88.1

Description

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2026-07-26

glibc - 2.44

Ebuild name:

sys-libs/glibc-2.44

Description

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Added to portage

2026-07-26

globalid - 1.4.0

Ebuild name:

dev-ruby/globalid-1.4.0

Description

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Added to portage

2026-07-26

importmap-rails - 2.2.3-r1

Ebuild name:

dev-ruby/importmap-rails-2.2.3-r1

Description

Use ESM with importmap to manage JavaScript in Rails

Added to portage

2026-07-26

io-endpoint - 0.17.1-r1

Ebuild name:

dev-ruby/io-endpoint-0.17.1-r1

Description

Provides a separation of concerns interface for IO endpoints

Added to portage

2026-07-26

jackett-bin - 0.24.1367

Ebuild name:

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Description

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2026-07-26

kdiff3 - 1.12.6

Ebuild name:

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Description

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2026-07-26

kid3 - 3.10.1

Ebuild name:

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Description

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2026-07-26

libdisplay-info - 0.4.0

Ebuild name:

media-libs/libdisplay-info-0.4.0

Description

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Added to portage

2026-07-26

libqalculate - 5.12.0

Ebuild name:

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Description

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Added to portage

2026-07-26

librsvg - 2.62.3

Ebuild name:

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Description

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Added to portage

2026-07-26

liquidctl - 1.16.0

Ebuild name:

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Description

Cross-platform tool and drivers for liquid coolers and other devices

Added to portage

2026-07-26

live - 2026.07.23

Ebuild name:

media-plugins/live-2026.07.23

Description

Libraries for standards-based RTP/RTCP/RTSP multimedia streaming

Added to portage

2026-07-26

localhost - 1.7.0-r1

Ebuild name:

dev-ruby/localhost-1.7.0-r1

Description

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Added to portage

2026-07-26

mixlib-shellout - 3.4.13

Ebuild name:

dev-ruby/mixlib-shellout-3.4.13

Description

Run external commands on Unix or Windows

Added to portage

2026-07-26

mocha - 2.8.2-r1

Ebuild name:

dev-ruby/mocha-2.8.2-r1

Description

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Added to portage

2026-07-26

mqtt - 0.7.0

Ebuild name:

dev-ruby/mqtt-0.7.0

Description

Pure Ruby gem that implements the MQTT protocol

Added to portage

2026-07-26

muon - 0.6.0

Ebuild name:

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Description

A meson-compatible build system

Added to portage

2026-07-26

net-imap - 0.4.25

Ebuild name:

dev-ruby/net-imap-0.4.25

Description

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2026-07-26

net-imap - 0.5.15

Ebuild name:

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Description

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Added to portage

2026-07-26

net-imap - 0.6.6

Ebuild name:

dev-ruby/net-imap-0.6.6

Description

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Added to portage

2026-07-26

ollama - 0.32.4

Ebuild name:

sci-ml/ollama-0.32.4

Description

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Added to portage

2026-07-26

openjdk - 11.0.32_p9

Ebuild name:

dev-java/openjdk-11.0.32_p9

Description

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Added to portage

2026-07-26

openjdk - 17.0.20_p8

Ebuild name:

dev-java/openjdk-17.0.20_p8

Description

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Added to portage

2026-07-26

openjdk - 21.0.12_p8

Ebuild name:

dev-java/openjdk-21.0.12_p8

Description

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Added to portage

2026-07-26

openjdk - 25.0.4_p7

Ebuild name:

dev-java/openjdk-25.0.4_p7

Description

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Added to portage

2026-07-26

openjdk - 27_beta31

Ebuild name:

dev-java/openjdk-27_beta31

Description

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Added to portage

2026-07-26

openjdk - 28_alpha7

Ebuild name:

dev-java/openjdk-28_alpha7

Description

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Added to portage

2026-07-26

openjdk - 8.502_p07

Ebuild name:

dev-java/openjdk-8.502_p07

Description

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Added to portage

2026-07-26

openpgp-keys-alisarctl - 20200302-r1

Ebuild name:

sec-keys/openpgp-keys-alisarctl-20200302-r1

Description

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Added to portage

2026-07-26

propshaft - 1.3.1-r1

Ebuild name:

dev-ruby/propshaft-1.3.1-r1

Description

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Added to portage

2026-07-26

public_suffix - 7.0.5

Ebuild name:

dev-ruby/public_suffix-7.0.5

Description

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Added to portage

2026-07-26

puma - 7.2.1

Ebuild name:

www-servers/puma-7.2.1

Description

a simple, fast, threaded, and highly concurrent HTTP 1.1 server for Ruby/Rac

Added to portage

2026-07-26

puppet-lint - 5.1.1

Ebuild name:

app-admin/puppet-lint-5.1.1

Description

A linter for puppet DSL

Added to portage

2026-07-26

qalculate-gtk - 5.12.0

Ebuild name:

sci-calculators/qalculate-gtk-5.12.0

Description

Modern multi-purpose calculator

Added to portage

2026-07-26

qalculate-qt - 5.12.0

Ebuild name:

sci-calculators/qalculate-qt-5.12.0

Description

Qt-based UI for libqalculate

Added to portage

2026-07-26

rails - 8.0.4-r1

Ebuild name:

dev-ruby/rails-8.0.4-r1

Description

ruby on rails is a web-application and persistence framework

Added to portage

2026-07-26

rails - 8.1.2-r1

Ebuild name:

dev-ruby/rails-8.1.2-r1

Description

ruby on rails is a web-application and persistence framework

Added to portage

2026-07-26

railties - 8.0.4-r1

Ebuild name:

dev-ruby/railties-8.0.4-r1

Description

Tools for creating, working with, and running Rails applications

Added to portage

2026-07-26

railties - 8.1.2-r1

Ebuild name:

dev-ruby/railties-8.1.2-r1

Description

Tools for creating, working with, and running Rails applications

Added to portage

2026-07-26

ruby - 3.3.12

Ebuild name:

dev-lang/ruby-3.3.12

Description

An object-oriented scripting language

Added to portage

2026-07-26

ruby - 3.4.10

Ebuild name:

dev-lang/ruby-3.4.10

Description

An object-oriented scripting language

Added to portage

2026-07-26

ruby - 4.0.6

Ebuild name:

dev-lang/ruby-4.0.6

Description

An object-oriented scripting language

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2026-07-26

seafile - 9.0.20

Ebuild name:

net-misc/seafile-9.0.20

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2026-07-26

seafile-client - 9.0.20

Ebuild name:

net-misc/seafile-client-9.0.20

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2026-07-26

sh - 2.4.0

Ebuild name:

dev-python/sh-2.4.0

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2026-07-26

sinatra - 4.2.1-r1

Ebuild name:

dev-ruby/sinatra-4.2.1-r1

Description

A DSL for quickly creating web applications in Ruby with minimal effort

Added to portage

2026-07-26

sprockets-rails - 3.5.2-r1

Ebuild name:

dev-ruby/sprockets-rails-3.5.2-r1

Description

Sprockets implementation for Rails 4.x (and beyond) Asset Pipelin

Added to portage

2026-07-26

strawberry - 1.2.25

Ebuild name:

media-sound/strawberry-1.2.25

Description

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Added to portage

2026-07-26

sus-fixtures-async - 0.2.0-r2

Ebuild name:

dev-ruby/sus-fixtures-async-0.2.0-r2

Description

Convenient fixture for testing async components in a reactor

Added to portage

2026-07-26

tilt - 2.8.0

Ebuild name:

dev-ruby/tilt-2.8.0

Description

Thin interface over template engines to make their usage as generic as possible

Added to portage

2026-07-26

unidiff - 1.0.0

Ebuild name:

dev-python/unidiff-1.0.0

Description

Unified diff parsing/metadata extraction library

Added to portage

2026-07-26

vaultwarden - 1.37.0

Ebuild name:

app-admin/vaultwarden-1.37.0

Description

Unofficial Bitwarden compatible password manager

Added to portage

2026-07-26

vaultwarden-web - 2026.6.4

Ebuild name:

www-apps/vaultwarden-web-2026.6.4

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2026-07-26

yard - 0.9.45

Ebuild name:

dev-ruby/yard-0.9.45

Description

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2026-07-26

zeitwerk - 2.8.2

Ebuild name:

dev-ruby/zeitwerk-2.8.2

Description

Efficient and thread-safe code loader for Ruby

Added to portage

2026-07-26

zlib - 3.2.3

Ebuild name:

dev-ruby/zlib-3.2.3

Description

Ruby interface for the zlib compression/decompression library

Added to portage

2026-07-26

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