Gentoo.LinuxHowtos.org howtos, tips&tricks and tutorials for gentoo linux

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How to make X listen on port 6000

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Website translation planned

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Compile Time Estimator integrated into genlop

You are here: Portage

Details of sci-biology/pysam:

Description: Python interface for the SAM/BAM sequence alignment and mapping format
Homepage: https://github.com/pysam-developers/pysam https://pypi.org/project/pysam/

available versions:

releases	alpha	amd64	arm	hppa	ia64	mips	ppc	ppc64	ppc macos	s390	sh	sparc	x86	USE-Flags	dependencies	ebuild warnings
pysam-9999	-	-	-	-	-	-	-	-	-	-	-	-	-	none	show	show
pysam-0.23.3	-	-	-	-	-	-	-	-	-	-	-	-	-	none	show	show
pysam-0.23.0	-	~	-	-	-	-	-	-	-	-	-	-	~	none	show	show

Legend:
+ stable
~ testing
- not available
some ebuild warning depend on specific use-flags or architectures, all ebuild-warnings are shown.

Tutorials:
no tutorial found

back

New Packages

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2025-11-04

cloudflared - 2025.10.1

Ebuild name:

net-vpn/cloudflared-2025.10.1

Description

A command-line client and tunneling daemon for Cloudflare Tunnel

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2025-11-04

gnuradio - 3.10.12.0-r1

Ebuild name:

net-wireless/gnuradio-3.10.12.0-r1

Description

Toolkit that provides signal processing blocks to implement soft

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2025-11-04

golangci-lint - 2.6.0

Ebuild name:

dev-go/golangci-lint-2.6.0

Description

Fast linters runner for Go

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2025-11-04

gr-fosphor - 0.0_p20210108-r3

Ebuild name:

net-analyzer/gr-fosphor-0.0_p20210108-r3

Description

gnuradio fosphor block (GPU spectrum display)

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2025-11-04

laptop-mode-tools - 1.74-r1

Ebuild name:

app-laptop/laptop-mode-tools-1.74-r1

Description

Linux kernel laptop_mode user-space utilities

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2025-11-04

lgogdownloader - 3.18

Ebuild name:

games-util/lgogdownloader-3.18

Description

Unofficial GOG.com downloader for Linux

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2025-11-04

libffado - 2.4.9-r1

Ebuild name:

media-libs/libffado-2.4.9-r1

Description

Driver for IEEE1394 (Firewire) audio interfaces

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2025-11-04

picard - 3.0_pre20251102

Ebuild name:

media-sound/picard-3.0_pre20251102

Description

Cross-platform music tagger

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2025-11-04

pymol - 3.1.0-r1

Ebuild name:

sci-chemistry/pymol-3.1.0-r1

Description

Python-extensible molecular graphics system

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2025-11-04

smplayer - 25.6.0_p20250903-r1

Ebuild name:

media-video/smplayer-25.6.0_p20250903-r1

Description

Great Qt GUI front-end for mplayer/mpv

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2025-11-04

vivaldi-snapshot - 7.7.3851.3

Ebuild name:

www-client/vivaldi-snapshot-7.7.3851.3

Description

A browser for our friends

Added to portage

2025-11-04

2025-11-03

bash-completion - 2.17.0

Ebuild name:

app-shells/bash-completion-2.17.0

Description

Programmable Completion for bash

Added to portage

2025-11-03

bitarray - 3.8.0

Ebuild name:

dev-python/bitarray-3.8.0

Description

Efficient arrays of booleans -- C extension

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2025-11-03

blessed - 1.23.0

Ebuild name:

dev-python/blessed-1.23.0

Description

Library for making terminal apps using colors, keyboard input and positio

Added to portage

2025-11-03

borgmatic - 2.0.11

Ebuild name:

app-backup/borgmatic-2.0.11

Description

Automatically create, prune and verify backups with borgbackup

Added to portage

2025-11-03

chromaprint - 1.6.0

Ebuild name:

media-libs/chromaprint-1.6.0

Description

Library implementing a custom algorithm for extracting audio fingerpri

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2025-11-03

cpp-httplib - 0.27.0

Ebuild name:

dev-cpp/cpp-httplib-0.27.0

Description

C++ HTTP/HTTPS server and client library

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2025-11-03

crengine-ng - 0.9.13

Ebuild name:

app-text/crengine-ng-0.9.13

Description

Cross-platform library designed to implement e-book readers

Added to portage

2025-11-03

dhcpcd-ui - 0.7.9-r1

Ebuild name:

net-misc/dhcpcd-ui-0.7.9-r1

Description

Desktop notification and configuration for dhcpcd

Added to portage

2025-11-03

dist-kernel - 6.12.57

Ebuild name:

virtual/dist-kernel-6.12.57

Description

Virtual to depend on any Distribution Kernel

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2025-11-03

dist-kernel - 6.17.7

Ebuild name:

virtual/dist-kernel-6.17.7

Description

Virtual to depend on any Distribution Kernel

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2025-11-03

dist-kernel - 6.6.116

Ebuild name:

virtual/dist-kernel-6.6.116

Description

Virtual to depend on any Distribution Kernel

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2025-11-03

environs - 14.5.0

Ebuild name:

dev-python/environs-14.5.0

Description

Python library for simplified environment variable parsing

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2025-11-03

freepg - 2.5.13

Ebuild name:

app-crypt/freepg-2.5.13

Description

GnuPG fork with improved RFC9850 compatibility

Added to portage

2025-11-03

fzf - 0.66.1

Ebuild name:

app-shells/fzf-0.66.1

Description

General-purpose command-line fuzzy finder, written in Golang

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2025-11-03

gcc - 16.0.0_p20251102

Ebuild name:

sys-devel/gcc-16.0.0_p20251102

Description

The GNU Compiler Collection

Added to portage

2025-11-03

gentoo-kernel - 6.12.57

Ebuild name:

sys-kernel/gentoo-kernel-6.12.57

Description

Linux kernel built with Gentoo patches

Added to portage

2025-11-03

gentoo-kernel - 6.17.7

Ebuild name:

sys-kernel/gentoo-kernel-6.17.7

Description

Linux kernel built with Gentoo patches

Added to portage

2025-11-03

gentoo-kernel - 6.6.116

Ebuild name:

sys-kernel/gentoo-kernel-6.6.116

Description

Linux kernel built with Gentoo patches

Added to portage

2025-11-03

gentoo-kernel-bin - 6.12.57

Ebuild name:

sys-kernel/gentoo-kernel-bin-6.12.57

Description

Pre-built Linux kernel with Gentoo patches

Added to portage

2025-11-03

gentoo-kernel-bin - 6.17.7

Ebuild name:

sys-kernel/gentoo-kernel-bin-6.17.7

Description

Pre-built Linux kernel with Gentoo patches

Added to portage

2025-11-03

gentoo-kernel-bin - 6.6.116

Ebuild name:

sys-kernel/gentoo-kernel-bin-6.6.116

Description

Pre-built Linux kernel with Gentoo patches

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2025-11-03

gentoo-sources - 6.12.57

Ebuild name:

sys-kernel/gentoo-sources-6.12.57

Description

Full sources including the Gentoo patchset for the . kernel tree

Added to portage

2025-11-03

gentoo-sources - 6.17.7

Ebuild name:

sys-kernel/gentoo-sources-6.17.7

Description

Full sources including the Gentoo patchset for the . kernel tree

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2025-11-03

gentoo-sources - 6.6.116

Ebuild name:

sys-kernel/gentoo-sources-6.6.116

Description

Full sources including the Gentoo patchset for the . kernel tree

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2025-11-03

git-sources - 6.18_rc4

Ebuild name:

sys-kernel/git-sources-6.18_rc4

Description

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2025-11-03

gle - 4.3.8-r1

Ebuild name:

sci-visualization/gle-4.3.8-r1

Description

Graphics Layout Engine

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2025-11-03

gpxsee - 15.0

Ebuild name:

sci-geosciences/gpxsee-15.0

Description

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2025-11-03

hypothesis - 6.144.0

Ebuild name:

dev-python/hypothesis-6.144.0

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2025-11-03

ig - 0.46.0

Ebuild name:

app-admin/ig-0.46.0

Description

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2025-11-03

incus - 6.18

Ebuild name:

app-containers/incus-6.18

Description

Modern, secure and powerful system container and virtual machine manager

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2025-11-03

jellyfin-bin - 10.11.2

Ebuild name:

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2025-11-03

katarakt - 0.3

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2025-11-03

kitty - 0.44.0

Ebuild name:

x11-terms/kitty-0.44.0

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2025-11-03

kitty-shell-integration - 0.44.0

Ebuild name:

x11-terms/kitty-shell-integration-0.44.0

Description

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2025-11-03

kitty-terminfo - 0.44.0

Ebuild name:

x11-terms/kitty-terminfo-0.44.0

Description

Terminfo for kitty, a GPU-based terminal emulator

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2025-11-03

libdrm - 2.4.128

Ebuild name:

x11-libs/libdrm-2.4.128

Description

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Added to portage

2025-11-03

libprojectm - 3.1.12-r4

Ebuild name:

media-libs/libprojectm-3.1.12-r4

Description

Graphical music visualization plugin similar to milkdrop

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2025-11-03

libva-intel-media-driver - 25.4.2

Ebuild name:

media-libs/libva-intel-media-driver-25.4.2

Description

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Added to portage

2025-11-03

master-pdf-editor - 5.9.94

Ebuild name:

app-text/master-pdf-editor-5.9.94

Description

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2025-11-03

maxima - 5.48.1-r1

Ebuild name:

sci-mathematics/maxima-5.48.1-r1

Description

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2025-11-03

moto - 5.1.16

Ebuild name:

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2025-11-03

nextcloud - 31.0.10

Ebuild name:

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2025-11-03

opentofu - 1.10.6

Ebuild name:

app-admin/opentofu-1.10.6

Description

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2025-11-03

podman-compose - 1.4.1

Ebuild name:

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Description

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2025-11-03

posframe - 1.4.4

Ebuild name:

app-emacs/posframe-1.4.4

Description

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2025-11-03

postfix - 3.11_pre20251102

Ebuild name:

mail-mta/postfix-3.11_pre20251102

Description

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2025-11-03

pov-mode - 3.3-r1

Ebuild name:

app-emacs/pov-mode-3.3-r1

Description

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2025-11-03

powerline - 2.5_p20221110

Ebuild name:

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Description

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2025-11-03

psutil - 7.1.3

Ebuild name:

dev-python/psutil-7.1.3

Description

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2025-11-03

qmapshack - 1.18.1

Ebuild name:

sci-geosciences/qmapshack-1.18.1

Description

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2025-11-03

qtpbfimageplugin - 5.2

Ebuild name:

dev-qt/qtpbfimageplugin-5.2

Description

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2025-11-03

qutebrowser - 3.6.1

Ebuild name:

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Description

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2025-11-03

railties - 7.1.6-r1

Ebuild name:

dev-ruby/railties-7.1.6-r1

Description

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Added to portage

2025-11-03

railties - 7.2.3-r1

Ebuild name:

dev-ruby/railties-7.2.3-r1

Description

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Added to portage

2025-11-03

rgbds - 1.0.0

Ebuild name:

dev-util/rgbds-1.0.0

Description

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Added to portage

2025-11-03

sbcl - 2.5.10

Ebuild name:

dev-lisp/sbcl-2.5.10

Description

Steel Bank Common Lisp (SBCL) is an implementation of ANSI Common Lisp

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2025-11-03

sonarr-bin - 4.0.16.2943

Ebuild name:

www-apps/sonarr-bin-4.0.16.2943

Description

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2025-11-03

sqlcl-bin - 25.2.2.199.0918

Ebuild name:

dev-db/sqlcl-bin-25.2.2.199.0918

Description

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Added to portage

2025-11-03

vanilla-kernel - 6.12.57

Ebuild name:

sys-kernel/vanilla-kernel-6.12.57

Description

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Added to portage

2025-11-03

vanilla-kernel - 6.17.7

Ebuild name:

sys-kernel/vanilla-kernel-6.17.7

Description

Linux kernel built from vanilla upstream sources

Added to portage

2025-11-03

vanilla-kernel - 6.6.116

Ebuild name:

sys-kernel/vanilla-kernel-6.6.116

Description

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Added to portage

2025-11-03

vanilla-sources - 6.12.57

Ebuild name:

sys-kernel/vanilla-sources-6.12.57

Description

Full sources for the Linux kernel

Added to portage

2025-11-03

vanilla-sources - 6.17.7

Ebuild name:

sys-kernel/vanilla-sources-6.17.7

Description

Full sources for the Linux kernel

Added to portage

2025-11-03

vanilla-sources - 6.6.116

Ebuild name:

sys-kernel/vanilla-sources-6.6.116

Description

Full sources for the Linux kernel

Added to portage

2025-11-03

virtualbox-kvm - 7.1.14_pre20251103

Ebuild name:

app-emulation/virtualbox-kvm-7.1.14_pre20251103

Description

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Added to portage

2025-11-03

virtualbox-kvm - 7.2.4_pre20251103

Ebuild name:

app-emulation/virtualbox-kvm-7.2.4_pre20251103

Description

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Added to portage

2025-11-03

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